Plectropomus leopardus

Bluedotted coraltrout

Maximum lifespan

26 yr

AnAge record

mtDNA size

16,714 bp

RefSeq NC_008449.1

GC content

43.25%

Whole genome

Non-coding

1,129 bp

D-loop 1,065 bp

Where Bluedotted coraltrout sits among 2,335 species

Whole-genome GC content against maximum lifespan. Bluedotted coraltrout has the 588th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,714 bp

GC skew (G − C) / (G + C): −0.248
AT skew (A − T) / (A + T): +0.015

Life history

Maximum lifespan: 26 years
Adult weight: 13 kg
Female sexual maturity: 3 years
Male sexual maturity: 3.5 years

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04379)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,714 bp

Protein-coding11,385 bp

12S rRNA951 bp

16S rRNA1,691 bp

All tRNA1,559 bp

D-loop1,065 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Plectropomus leopardus genes

ND1NADH dehydrogenase subunit 1	975 bp	25.7%	27.5%	14.7%	32.1%	46.77%	−0.373	−0.033
ND2NADH dehydrogenase subunit 2	1,046 bp	28.2%	26.4%	11.9%	33.6%	45.41%	−0.478	+0.033
COX1Cytochrome c oxidase subunit I	1,551 bp	25.7%	31.9%	17.5%	24.9%	42.42%	−0.173	−0.109
COX2Cytochrome c oxidase subunit II	691 bp	29.4%	28.4%	16.4%	25.9%	42.26%	−0.226	+0.018
ATP8ATP synthase F0 subunit 8	172 bp	29.1%	29.1%	15.1%	26.7%	41.86%	−0.278	0.000
ATP6ATP synthase F0 subunit 6	684 bp	24.9%	33.9%	12.7%	28.5%	41.23%	−0.383	−0.154
COX3Cytochrome c oxidase subunit III	786 bp	24.2%	30.4%	17.9%	27.5%	45.42%	−0.210	−0.114
ND3NADH dehydrogenase subunit 3	349 bp	20.1%	33.5%	16.6%	29.8%	46.42%	−0.284	−0.251
ND4LNADH dehydrogenase subunit 4L	297 bp	20.2%	30.6%	15.8%	33.3%	49.16%	−0.356	−0.205
ND4NADH dehydrogenase subunit 4	1,381 bp	28.2%	27.7%	13.6%	30.5%	44.10%	−0.383	+0.008
ND5NADH dehydrogenase subunit 5	1,821 bp	28.0%	31.5%	14.0%	26.5%	40.53%	−0.309	−0.060
ND6NADH dehydrogenase subunit 6	516 bp	35.7%	19.4%	16.5%	28.5%	44.96%	−0.267	+0.296
CYTBCytochrome b	1,141 bp	25.6%	30.3%	15.4%	28.7%	44.08%	−0.300	−0.085
12S rRNA12S ribosomal RNA	951 bp	31.5%	21.9%	21.5%	25.1%	46.58%	−0.079	+0.181
16S rRNA16S ribosomal RNA	1,691 bp	33.7%	22.9%	19.6%	23.8%	43.41%	−0.098	+0.191
D-loopControl region (D-loop)	1,065 bp	37.2%	29.3%	13.6%	19.9%	33.52%	−0.188	+0.119

Codon usage

Counts per codon, darker is more frequent

Gene

3,801 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.3%

UUU117

UUC124

Leu L17.6%

UUA118

UUG24

CUU178

CUC120

CUA187

CUG41

Ile I7.2%

AUU162

AUC113

Met M4.1%

AUA105

AUG52

Val V5.5%

GUU67

GUC45

GUA72

GUG25

Ser S6.6%

UCU57

UCC53

UCA77

UCG8

AGU12

AGC45

Pro P5.6%

CCU78

CCC63

CCA62

CCG9

Thr T7.9%

ACU72

ACC98

ACA113

ACG18

Ala A9.0%

GCU85

GCC119

GCA118

GCG20

Tyr Y3.0%

UAU47

UAC67

His H2.8%

CAU42

CAC65

Gln Q2.5%

CAA82

CAG12

Asn N3.0%

AAU36

AAC78

Lys K2.1%

AAA71

AAG7

Asp D2.0%

GAU24

GAC51

Glu E2.6%

GAA79

GAG19

Cys C0.8%

UGU11

UGC18

Trp W2.9%

UGA97

UGG15

Arg R2.0%

CGU13

CGC20

CGA34

CGG10

Gly G6.3%

GGU54

GGC60

GGA86

GGG39

Stop 0.2%

UAA6

UAG1

AGA0

AGG0

Genome map

38 annotated features in NC_008449.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (43.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Plectropomus leopardus (NC_008449.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	69	69 bp	+	–
12S rRNA	Ribosomal RNA	70	1,020	951 bp	+	46.6%
tRNA-Val	Transfer RNA	1,021	1,091	71 bp	+	–
16S rRNA	Ribosomal RNA	1,092	2,782	1,691 bp	+	43.4%
tRNA-Leu (UUR)	Transfer RNA	2,783	2,855	73 bp	+	–
ND1	Protein-coding gene	2,856	3,830	975 bp	+	46.8%
tRNA-Ile	Transfer RNA	3,835	3,904	70 bp	+	–
tRNA-Gln	Transfer RNA	3,904	3,974	71 bp	−	–
tRNA-Met	Transfer RNA	3,975	4,043	69 bp	+	–
ND2	Protein-coding gene	4,044	5,089	1,046 bp	+	45.4%
tRNA-Trp	Transfer RNA	5,090	5,160	71 bp	+	–
tRNA-Ala	Transfer RNA	5,162	5,230	69 bp	+	–
tRNA-Asn	Transfer RNA	5,232	5,304	73 bp	−	–
tRNA-Cys	Transfer RNA	5,341	5,407	67 bp	−	–
tRNA-Tyr	Transfer RNA	5,408	5,477	70 bp	−	–
COX1	Protein-coding gene	5,479	7,029	1,551 bp	+	42.4%
tRNA-Ser (UCN)	Transfer RNA	7,030	7,100	71 bp	−	–
tRNA-Asp	Transfer RNA	7,103	7,176	74 bp	+	–
COX2	Protein-coding gene	7,183	7,873	691 bp	+	42.3%
tRNA-Lys	Transfer RNA	7,874	7,949	76 bp	+	–
ATP8	Protein-coding gene	7,951	8,122	172 bp	+	41.9%
ATP6	Protein-coding gene	8,110	8,793	684 bp	+	41.2%
COX3	Protein-coding gene	8,793	9,578	786 bp	+	45.4%
tRNA-Gly	Transfer RNA	9,578	9,647	70 bp	+	–
ND3	Protein-coding gene	9,648	9,996	349 bp	+	46.4%
tRNA-Arg	Transfer RNA	9,997	10,065	69 bp	+	–
ND4L	Protein-coding gene	10,066	10,362	297 bp	+	49.2%
ND4	Protein-coding gene	10,356	11,736	1,381 bp	+	44.1%
tRNA-His	Transfer RNA	11,737	11,805	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,816	11,889	74 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,890	11,962	73 bp	+	–
ND5	Protein-coding gene	11,963	13,783	1,821 bp	+	40.5%
ND6	Protein-coding gene	13,780	14,295	516 bp	−	45.0%
tRNA-Glu	Transfer RNA	14,296	14,364	69 bp	+	–
CYTB	Protein-coding gene	14,367	15,507	1,141 bp	+	44.1%
tRNA-Thr	Transfer RNA	15,508	15,579	72 bp	+	–
tRNA-Pro	Transfer RNA	15,579	15,649	71 bp	+	–
D-loop	Control region	15,650	16,714	1,065 bp	–	33.5%