MitoAge

Podomys floridanus

Florida mouse

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Maximum lifespan
7.4 yr
AnAge record
mtDNA size
16,486 bp
RefSeq NC_035595.1
GC content
35.31%
Whole genome
Non-coding
1,193 bp
Including the D-loop

Where Florida mouse sits among 2,335 species

Whole-genome GC content against maximum lifespan. Florida mouse has the 1,801st longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Florida mouse
  • This species
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Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,486 bp
GC skew (G − C) / (G + C)
−0.303
AT skew (A − T) / (A + T)
+0.099

Life history

Maximum lifespan
7.4 years
Adult weight
32 g
Birth weight
2.4 g
Basal metabolic rate
0.288 W
Female sexual maturity
40 days
Gestation or incubation
23 days
Litter or clutch size
2.5

Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 02925)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, small sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
New in build 2
In the database since
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,486 bp
Protein-coding11,348 bp
12S rRNA951 bp
16S rRNA1,505 bp
All tRNA1,495 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1957 bp33.1%29.0%12.1%25.7%37.83%−0.359+0.066
ND2NADH dehydrogenase subunit 21,038 bp40.8%28.0%7.2%23.9%31.12%−0.536+0.186
COX1Cytochrome c oxidase subunit I1,545 bp30.0%32.7%16.0%21.3%37.28%−0.142−0.042
COX2Cytochrome c oxidase subunit II684 bp35.7%29.4%13.0%21.9%34.94%−0.255+0.097
ATP8ATP synthase F0 subunit 8204 bp41.2%29.4%5.4%24.0%29.41%−0.633+0.167
ATP6ATP synthase F0 subunit 6681 bp32.5%30.4%10.3%26.9%37.15%−0.447+0.033
COX3Cytochrome c oxidase subunit III784 bp30.5%31.1%14.5%23.9%38.39%−0.243−0.010
ND3NADH dehydrogenase subunit 3348 bp34.2%31.6%10.6%23.6%34.20%−0.378+0.039
ND4LNADH dehydrogenase subunit 4L297 bp34.0%33.0%10.1%22.9%33.00%−0.388+0.015
ND4NADH dehydrogenase subunit 41,378 bp36.1%30.0%9.1%24.7%33.89%−0.460+0.091
ND5NADH dehydrogenase subunit 51,815 bp35.4%29.8%9.5%25.2%34.77%−0.452+0.086
ND6NADH dehydrogenase subunit 6528 bp43.6%21.4%7.4%27.7%35.04%−0.578+0.341
CYTBCytochrome b1,144 bp32.8%29.1%12.2%25.9%38.11%−0.358+0.059
12S rRNA12S ribosomal RNA951 bp37.6%24.6%17.7%20.1%37.75%−0.064+0.209
16S rRNA16S ribosomal RNA1,505 bp39.3%24.9%16.9%18.9%35.81%−0.058+0.224

Codon usage

Counts per codon, darker is more frequent

3,800 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.2%
UUU116
UUC119
Leu L14.9%
UUA165
UUG13
CUU77
CUC40
CUA251
CUG20
Ile I9.2%
AUU192
AUC157
Met M7.2%
AUA248
AUG27
Val V4.7%
GUU43
GUC11
GUA113
GUG11
Ser S8.1%
UCU55
UCC50
UCA139
UCG7
AGU27
AGC28
Pro P5.1%
CCU40
CCC24
CCA123
CCG8
Thr T8.3%
ACU77
ACC67
ACA167
ACG4
Ala A5.8%
GCU56
GCC73
GCA86
GCG4
Tyr Y3.4%
UAU75
UAC54
His H2.4%
CAU41
CAC52
Gln Q2.2%
CAA81
CAG3
Asn N4.8%
AAU81
AAC100
Lys K2.7%
AAA98
AAG4
Asp D1.7%
GAU29
GAC37
Glu E2.4%
GAA80
GAG11
Cys C0.8%
UGU13
UGC18
Trp W2.7%
UGA98
UGG5
Arg R1.7%
CGU13
CGC11
CGA39
CGG0
Gly G5.5%
GGU34
GGC32
GGA111
GGG32
Stop 0.3%
UAA9
UAG1
AGA0
AGG0

Genome map

37 annotated features in NC_035595.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (35.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA26333068 bp+–
12S rRNARibosomal RNA3331,283951 bp+37.8%
tRNA-ValTransfer RNA1,2841,35572 bp+–
16S rRNARibosomal RNA1,4022,9061,505 bp+35.8%
tRNA-Leu (UUR)Transfer RNA2,9232,99775 bp+–
ND1Protein-coding gene2,9983,954957 bp+37.8%
tRNA-IleTransfer RNA3,9524,02271 bp+–
tRNA-GlnTransfer RNA4,0194,08870 bp−–
tRNA-MetTransfer RNA4,0944,16269 bp+–
ND2Protein-coding gene4,1635,2001,038 bp+31.1%
tRNA-TrpTransfer RNA5,2025,26463 bp+–
tRNA-AlaTransfer RNA5,2675,33569 bp−–
tRNA-AsnTransfer RNA5,3385,40770 bp−–
tRNA-CysTransfer RNA5,4395,50567 bp−–
tRNA-TyrTransfer RNA5,5065,57166 bp−–
COX1Protein-coding gene5,5737,1171,545 bp+37.3%
tRNA-Ser (UCN)Transfer RNA7,1157,18369 bp−–
tRNA-AspTransfer RNA7,1877,25468 bp+–
COX2Protein-coding gene7,2567,939684 bp+34.9%
tRNA-LysTransfer RNA7,9438,00765 bp+–
ATP8Protein-coding gene8,0098,212204 bp+29.4%
ATP6Protein-coding gene8,1708,850681 bp+37.2%
COX3Protein-coding gene8,8509,633784 bp+38.4%
tRNA-GlyTransfer RNA9,6349,70269 bp+–
ND3Protein-coding gene9,70310,050348 bp+34.2%
tRNA-ArgTransfer RNA10,05310,12068 bp+–
ND4LProtein-coding gene10,12310,419297 bp+33.0%
ND4Protein-coding gene10,41311,7901,378 bp+33.9%
tRNA-HisTransfer RNA11,79111,85868 bp+–
tRNA-Ser (AGY)Transfer RNA11,85911,91658 bp+–
tRNA-Leu (CUN)Transfer RNA11,91711,98670 bp+–
ND5Protein-coding gene11,98713,8011,815 bp+34.8%
ND6Protein-coding gene13,79814,325528 bp−35.0%
tRNA-GluTransfer RNA14,32614,39469 bp−–
CYTBProtein-coding gene14,40015,5431,144 bp+38.1%
tRNA-ThrTransfer RNA15,54415,61168 bp+–
tRNA-ProTransfer RNA15,61215,67867 bp−–

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