Poecilia reticulata

Guppy

Maximum lifespan

5 yr

AnAge record

mtDNA size

16,538 bp

RefSeq NC_024238.1

GC content

41.63%

Whole genome

Non-coding

955 bp

D-loop 875 bp

Where Guppy sits among 2,335 species

Whole-genome GC content against maximum lifespan. Guppy has the 1,985th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,538 bp

GC skew (G − C) / (G + C): −0.293
AT skew (A − T) / (A + T): +0.037

Life history

Maximum lifespan: 5 years
Male sexual maturity: 74 days

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04006)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,538 bp

Protein-coding11,411 bp

12S rRNA948 bp

16S rRNA1,672 bp

All tRNA1,552 bp

D-loop875 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Poecilia reticulata genes

ND1NADH dehydrogenase subunit 1	975 bp	27.9%	32.0%	13.1%	27.0%	40.10%	−0.345	−0.068
ND2NADH dehydrogenase subunit 2	1,045 bp	30.0%	27.5%	11.1%	31.4%	42.49%	−0.477	+0.045
COX1Cytochrome c oxidase subunit I	1,557 bp	26.6%	31.5%	16.5%	25.4%	41.94%	−0.213	−0.084
COX2Cytochrome c oxidase subunit II	691 bp	30.1%	28.8%	15.2%	25.9%	41.10%	−0.261	+0.022
ATP8ATP synthase F0 subunit 8	168 bp	33.9%	29.2%	9.5%	27.4%	36.91%	−0.484	+0.075
ATP6ATP synthase F0 subunit 6	684 bp	27.6%	32.2%	13.3%	26.9%	40.21%	−0.338	−0.076
COX3Cytochrome c oxidase subunit III	785 bp	27.6%	29.7%	15.4%	27.3%	42.68%	−0.278	−0.036
ND3NADH dehydrogenase subunit 3	349 bp	25.5%	35.5%	13.8%	25.2%	38.97%	−0.294	−0.164
ND4LNADH dehydrogenase subunit 4L	297 bp	24.6%	32.0%	13.1%	30.3%	43.43%	−0.395	−0.131
ND4NADH dehydrogenase subunit 4	1,381 bp	28.0%	29.7%	12.5%	29.8%	42.29%	−0.408	−0.029
ND5NADH dehydrogenase subunit 5	1,839 bp	30.6%	29.5%	11.1%	28.8%	39.91%	−0.444	+0.019
ND6NADH dehydrogenase subunit 6	522 bp	39.7%	16.1%	9.2%	35.1%	44.25%	−0.584	+0.423
CYTBCytochrome b	1,140 bp	28.0%	31.8%	13.6%	26.6%	40.18%	−0.323	−0.065
12S rRNA12S ribosomal RNA	948 bp	32.6%	20.9%	20.9%	25.6%	46.52%	−0.102	+0.219
16S rRNA16S ribosomal RNA	1,672 bp	34.9%	21.4%	19.0%	24.7%	43.66%	−0.132	+0.240
D-loopControl region (D-loop)	875 bp	33.5%	32.2%	13.6%	20.7%	34.29%	−0.207	+0.019

Codon usage

Counts per codon, darker is more frequent

Gene

3,809 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.4%

UUU156

UUC88

Leu L17.1%

UUA166

UUG20

CUU153

CUC83

CUA199

CUG31

Ile I8.0%

AUU210

AUC94

Met M4.3%

AUA125

AUG37

Val V4.8%

GUU71

GUC20

GUA72

GUG18

Ser S7.0%

UCU53

UCC71

UCA85

UCG4

AGU10

AGC45

Pro P5.7%

CCU58

CCC74

CCA82

CCG5

Thr T7.8%

ACU57

ACC126

ACA111

ACG3

Ala A8.4%

GCU54

GCC147

GCA111

GCG7

Tyr Y2.9%

UAU62

UAC48

His H2.9%

CAU33

CAC76

Gln Q2.5%

CAA91

CAG3

Asn N3.4%

AAU60

AAC71

Lys K2.0%

AAA71

AAG5

Asp D2.1%

GAU38

GAC41

Glu E2.5%

GAA79

GAG15

Cys C0.8%

UGU10

UGC21

Trp W3.1%

UGA105

UGG14

Arg R2.0%

CGU9

CGC17

CGA45

CGG6

Gly G6.2%

GGU38

GGC45

GGA109

GGG43

Stop 0.2%

UAA8

UAG0

AGA0

AGG0

Genome map

38 annotated features in NC_024238.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (41.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Poecilia reticulata (NC_024238.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	69	69 bp	+	–
12S rRNA	Ribosomal RNA	70	1,017	948 bp	+	46.5%
tRNA-Val	Transfer RNA	1,018	1,088	71 bp	+	–
16S rRNA	Ribosomal RNA	1,089	2,760	1,672 bp	+	43.7%
tRNA-Leu (UUR)	Transfer RNA	2,761	2,835	75 bp	+	–
ND1	Protein-coding gene	2,836	3,810	975 bp	+	40.1%
tRNA-Ile	Transfer RNA	3,817	3,886	70 bp	+	–
tRNA-Gln	Transfer RNA	3,886	3,956	71 bp	−	–
tRNA-Met	Transfer RNA	3,956	4,024	69 bp	+	–
ND2	Protein-coding gene	4,025	5,069	1,045 bp	+	42.5%
tRNA-Trp	Transfer RNA	5,070	5,139	70 bp	+	–
tRNA-Ala	Transfer RNA	5,143	5,211	69 bp	−	–
tRNA-Asn	Transfer RNA	5,213	5,285	73 bp	−	–
tRNA-Cys	Transfer RNA	5,322	5,388	67 bp	−	–
tRNA-Tyr	Transfer RNA	5,390	5,459	70 bp	−	–
COX1	Protein-coding gene	5,461	7,017	1,557 bp	+	41.9%
tRNA-Ser (UCN)	Transfer RNA	7,023	7,093	71 bp	−	–
tRNA-Asp	Transfer RNA	7,096	7,166	71 bp	+	–
COX2	Protein-coding gene	7,175	7,865	691 bp	+	41.1%
tRNA-Lys	Transfer RNA	7,866	7,938	73 bp	+	–
ATP8	Protein-coding gene	7,942	8,109	168 bp	+	36.9%
ATP6	Protein-coding gene	8,100	8,783	684 bp	+	40.2%
COX3	Protein-coding gene	8,783	9,567	785 bp	+	42.7%
tRNA-Gly	Transfer RNA	9,568	9,639	72 bp	+	–
ND3	Protein-coding gene	9,640	9,988	349 bp	+	39.0%
tRNA-Arg	Transfer RNA	9,989	10,057	69 bp	+	–
ND4L	Protein-coding gene	10,058	10,354	297 bp	+	43.4%
ND4	Protein-coding gene	10,348	11,728	1,381 bp	+	42.3%
tRNA-His	Transfer RNA	11,729	11,798	70 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,799	11,868	70 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,879	11,951	73 bp	+	–
ND5	Protein-coding gene	11,952	13,790	1,839 bp	+	39.9%
ND6	Protein-coding gene	13,787	14,308	522 bp	−	44.3%
tRNA-Glu	Transfer RNA	14,309	14,377	69 bp	−	–
CYTB	Protein-coding gene	14,382	15,521	1,140 bp	+	40.2%
tRNA-Thr	Transfer RNA	15,522	15,594	73 bp	+	–
tRNA-Pro	Transfer RNA	15,594	15,663	70 bp	−	–
D-loop	Control region	15,664	16,538	875 bp	–	34.3%