MitoAge

Pollachius pollachius

European pollock

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Maximum lifespan
8 yr
AnAge record
mtDNA size
16,539 bp
RefSeq NC_015097.1
GC content
43.09%
Whole genome
Non-coding
979 bp
D-loop 865 bp

Where European pollock sits among 2,335 species

Whole-genome GC content against maximum lifespan. European pollock has the 1,721st longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %European pollock
  • This species
  • Other ray-finned fishes
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,539 bp
GC skew (G − C) / (G + C)
−0.204
AT skew (A − T) / (A + T)
−0.027

Life history

Maximum lifespan
8 years
Adult weight
10 kg

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04033)

About this record

Lifespan source
AnAge build 15
Based on
an animal in the wild
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,539 bp
Protein-coding11,405 bp
12S rRNA952 bp
16S rRNA1,666 bp
All tRNA1,537 bp
D-loop865 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1975 bp22.7%32.5%17.1%27.7%44.82%−0.236−0.178
ND2NADH dehydrogenase subunit 21,045 bp26.1%31.5%14.6%27.8%42.39%−0.309−0.093
COX1Cytochrome c oxidase subunit I1,551 bp25.8%31.5%17.8%25.0%42.75%−0.167−0.099
COX2Cytochrome c oxidase subunit II691 bp29.4%30.1%16.1%24.5%40.52%−0.207−0.012
ATP8ATP synthase F0 subunit 8168 bp30.4%26.2%9.5%33.9%43.45%−0.562+0.074
ATP6ATP synthase F0 subunit 6682 bp25.8%34.8%12.6%26.8%39.44%−0.361−0.148
COX3Cytochrome c oxidase subunit III786 bp26.1%30.0%17.0%26.8%43.89%−0.223−0.070
ND3NADH dehydrogenase subunit 3349 bp20.9%35.0%17.5%26.6%44.13%−0.208−0.251
ND4LNADH dehydrogenase subunit 4L297 bp23.2%30.0%15.8%31.0%46.80%−0.324−0.127
ND4NADH dehydrogenase subunit 41,381 bp26.1%32.6%14.8%26.5%41.35%−0.282−0.111
ND5NADH dehydrogenase subunit 51,839 bp27.2%30.7%15.0%27.1%42.03%−0.288−0.060
ND6NADH dehydrogenase subunit 6522 bp35.6%16.3%16.9%31.2%48.08%−0.299+0.373
CYTBCytochrome b1,141 bp24.4%33.1%15.8%26.7%42.51%−0.258−0.152
12S rRNA12S ribosomal RNA952 bp32.1%22.6%21.6%23.6%45.27%−0.044+0.175
16S rRNA16S ribosomal RNA1,666 bp32.7%23.3%20.8%23.2%44.00%−0.053+0.166
D-loopControl region (D-loop)865 bp30.8%33.1%15.7%20.5%36.19%−0.131−0.036

Codon usage

Counts per codon, darker is more frequent

3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.1%
UUU138
UUC95
Leu L17.2%
UUA144
UUG41
CUU179
CUC110
CUA150
CUG32
Ile I6.6%
AUU177
AUC75
Met M4.6%
AUA118
AUG57
Val V6.1%
GUU69
GUC42
GUA85
GUG35
Ser S6.8%
UCU74
UCC51
UCA66
UCG8
AGU26
AGC34
Pro P5.7%
CCU86
CCC75
CCA44
CCG12
Thr T7.6%
ACU76
ACC78
ACA124
ACG11
Ala A9.4%
GCU95
GCC130
GCA117
GCG14
Tyr Y2.8%
UAU58
UAC50
His H2.8%
CAU59
CAC47
Gln Q2.5%
CAA78
CAG16
Asn N3.0%
AAU64
AAC49
Lys K1.9%
AAA54
AAG17
Asp D2.0%
GAU39
GAC38
Glu E2.6%
GAA65
GAG33
Cys C0.7%
UGU10
UGC17
Trp W3.2%
UGA106
UGG14
Arg R2.0%
CGU16
CGC15
CGA31
CGG13
Gly G6.4%
GGU52
GGC79
GGA74
GGG38
Stop 0.2%
UAA5
UAG1
AGA0
AGG1

Genome map

38 annotated features in NC_015097.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (43.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16868 bp+–
12S rRNARibosomal RNA691,020952 bp+45.3%
tRNA-ValTransfer RNA1,0211,09272 bp+–
16S rRNARibosomal RNA1,0932,7581,666 bp+44.0%
tRNA-Leu (UUR)Transfer RNA2,7592,83274 bp+–
ND1Protein-coding gene2,8333,807975 bp+44.8%
tRNA-IleTransfer RNA3,8093,87870 bp+–
tRNA-GlnTransfer RNA3,8783,94871 bp−–
tRNA-MetTransfer RNA3,9484,01770 bp+–
ND2Protein-coding gene4,0185,0621,045 bp+42.4%
tRNA-TrpTransfer RNA5,0635,13270 bp+–
tRNA-AlaTransfer RNA5,1345,20269 bp−–
tRNA-AsnTransfer RNA5,2055,27874 bp−–
tRNA-CysTransfer RNA5,3095,37466 bp−–
tRNA-TyrTransfer RNA5,3755,44167 bp−–
COX1Protein-coding gene5,4436,9931,551 bp+42.8%
tRNA-Ser (UCN)Transfer RNA6,9967,06671 bp−–
tRNA-AspTransfer RNA7,0717,13666 bp+–
COX2Protein-coding gene7,1517,841691 bp+40.5%
tRNA-LysTransfer RNA7,8427,91574 bp+–
ATP8Protein-coding gene7,9178,084168 bp+43.5%
ATP6Protein-coding gene8,0758,756682 bp+39.4%
COX3Protein-coding gene8,7589,543786 bp+43.9%
tRNA-GlyTransfer RNA9,5449,61168 bp+–
ND3Protein-coding gene9,6139,961349 bp+44.1%
tRNA-ArgTransfer RNA9,96210,03069 bp+–
ND4LProtein-coding gene10,03110,327297 bp+46.8%
ND4Protein-coding gene10,32111,7011,381 bp+41.4%
tRNA-HisTransfer RNA11,70211,77069 bp+–
tRNA-Ser (AGY)Transfer RNA11,77111,83868 bp+–
tRNA-Leu (CUN)Transfer RNA11,84111,91373 bp+–
ND5Protein-coding gene11,91413,7521,839 bp+42.0%
ND6Protein-coding gene13,74814,269522 bp−48.1%
tRNA-GluTransfer RNA14,27014,33869 bp−–
CYTBProtein-coding gene14,34315,4831,141 bp+42.5%
tRNA-ThrTransfer RNA15,48415,55471 bp+–
tRNA-ProTransfer RNA15,60515,67470 bp−–
D-loopControl region15,67516,539865 bp–36.2%

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