Pollachius virens

Pollock

Maximum lifespan

25 yr

AnAge record

mtDNA size

16,556 bp

RefSeq NC_015094.1

GC content

42.94%

Whole genome

Non-coding

998 bp

D-loop 873 bp

Where Pollock sits among 2,335 species

Whole-genome GC content against maximum lifespan. Pollock has the 624th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,556 bp

GC skew (G − C) / (G + C): −0.204
AT skew (A − T) / (A + T): −0.030

Life history

Maximum lifespan: 25 years
Adult weight: 17.6 kg
Female sexual maturity: 2 years
Male sexual maturity: 2.3 years

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04034)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,556 bp

Protein-coding11,405 bp

12S rRNA952 bp

16S rRNA1,665 bp

All tRNA1,536 bp

D-loop873 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Pollachius virens genes

ND1NADH dehydrogenase subunit 1	975 bp	22.8%	32.5%	16.8%	27.9%	44.72%	−0.248	−0.176
ND2NADH dehydrogenase subunit 2	1,045 bp	26.5%	31.8%	14.9%	26.8%	41.72%	−0.284	−0.090
COX1Cytochrome c oxidase subunit I	1,551 bp	25.6%	31.7%	17.7%	25.0%	42.68%	−0.172	−0.107
COX2Cytochrome c oxidase subunit II	691 bp	29.8%	29.8%	15.9%	24.5%	40.38%	−0.211	0.000
ATP8ATP synthase F0 subunit 8	168 bp	30.4%	26.2%	9.5%	33.9%	43.45%	−0.562	+0.074
ATP6ATP synthase F0 subunit 6	682 bp	26.0%	33.7%	12.6%	27.7%	40.32%	−0.375	−0.130
COX3Cytochrome c oxidase subunit III	786 bp	25.8%	30.0%	17.0%	27.1%	44.15%	−0.228	−0.075
ND3NADH dehydrogenase subunit 3	349 bp	21.2%	33.0%	17.2%	28.7%	45.85%	−0.250	−0.217
ND4LNADH dehydrogenase subunit 4L	297 bp	22.9%	30.3%	16.2%	30.6%	46.80%	−0.309	−0.139
ND4NADH dehydrogenase subunit 4	1,381 bp	25.3%	32.6%	15.6%	26.4%	42.07%	−0.256	−0.125
ND5NADH dehydrogenase subunit 5	1,839 bp	27.6%	31.1%	14.6%	26.6%	41.27%	−0.291	−0.059
ND6NADH dehydrogenase subunit 6	522 bp	36.8%	17.6%	15.7%	29.9%	45.59%	−0.311	+0.352
CYTBCytochrome b	1,141 bp	24.0%	33.2%	15.9%	26.9%	42.77%	−0.258	−0.161
12S rRNA12S ribosomal RNA	952 bp	31.6%	22.8%	22.1%	23.5%	45.59%	−0.032	+0.162
16S rRNA16S ribosomal RNA	1,665 bp	32.7%	23.6%	20.6%	23.1%	43.66%	−0.056	+0.162
D-loopControl region (D-loop)	873 bp	29.8%	34.1%	15.5%	20.6%	36.08%	−0.143	−0.068

Codon usage

Counts per codon, darker is more frequent

Gene

3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.1%

UUU138

UUC94

Leu L17.2%

UUA154

UUG33

CUU187

CUC97

CUA145

CUG39

Ile I6.6%

AUU177

AUC75

Met M4.6%

AUA113

AUG62

Val V6.0%

GUU75

GUC41

GUA87

GUG25

Ser S6.9%

UCU68

UCC53

UCA71

UCG12

AGU26

AGC34

Pro P5.7%

CCU78

CCC85

CCA45

CCG8

Thr T7.7%

ACU74

ACC80

ACA128

ACG10

Ala A9.2%

GCU101

GCC128

GCA107

GCG16

Tyr Y2.8%

UAU60

UAC48

His H2.8%

CAU51

CAC55

Gln Q2.5%

CAA81

CAG13

Asn N3.0%

AAU70

AAC44

Lys K1.9%

AAA57

AAG14

Asp D2.0%

GAU39

GAC38

Glu E2.6%

GAA62

GAG37

Cys C0.7%

UGU15

UGC12

Trp W3.2%

UGA104

UGG16

Arg R2.0%

CGU18

CGC13

CGA31

CGG13

Gly G6.4%

GGU46

GGC83

GGA69

GGG45

Stop 0.2%

UAA5

UAG1

AGA0

AGG1

Genome map

38 annotated features in NC_015094.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (42.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Pollachius virens (NC_015094.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	68	68 bp	+	–
12S rRNA	Ribosomal RNA	69	1,020	952 bp	+	45.6%
tRNA-Val	Transfer RNA	1,021	1,092	72 bp	+	–
16S rRNA	Ribosomal RNA	1,093	2,757	1,665 bp	+	43.7%
tRNA-Leu (UUR)	Transfer RNA	2,758	2,831	74 bp	+	–
ND1	Protein-coding gene	2,832	3,806	975 bp	+	44.7%
tRNA-Ile	Transfer RNA	3,808	3,877	70 bp	+	–
tRNA-Gln	Transfer RNA	3,877	3,947	71 bp	−	–
tRNA-Met	Transfer RNA	3,947	4,016	70 bp	+	–
ND2	Protein-coding gene	4,017	5,061	1,045 bp	+	41.7%
tRNA-Trp	Transfer RNA	5,062	5,131	70 bp	+	–
tRNA-Ala	Transfer RNA	5,133	5,201	69 bp	−	–
tRNA-Asn	Transfer RNA	5,204	5,277	74 bp	−	–
tRNA-Cys	Transfer RNA	5,309	5,374	66 bp	−	–
tRNA-Tyr	Transfer RNA	5,375	5,441	67 bp	−	–
COX1	Protein-coding gene	5,443	6,993	1,551 bp	+	42.7%
tRNA-Ser (UCN)	Transfer RNA	6,996	7,066	71 bp	−	–
tRNA-Asp	Transfer RNA	7,071	7,136	66 bp	+	–
COX2	Protein-coding gene	7,151	7,841	691 bp	+	40.4%
tRNA-Lys	Transfer RNA	7,842	7,915	74 bp	+	–
ATP8	Protein-coding gene	7,917	8,084	168 bp	+	43.5%
ATP6	Protein-coding gene	8,075	8,756	682 bp	+	40.3%
COX3	Protein-coding gene	8,758	9,543	786 bp	+	44.2%
tRNA-Gly	Transfer RNA	9,544	9,611	68 bp	+	–
ND3	Protein-coding gene	9,613	9,961	349 bp	+	45.9%
tRNA-Arg	Transfer RNA	9,962	10,030	69 bp	+	–
ND4L	Protein-coding gene	10,031	10,327	297 bp	+	46.8%
ND4	Protein-coding gene	10,321	11,701	1,381 bp	+	42.1%
tRNA-His	Transfer RNA	11,702	11,770	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,771	11,838	68 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,841	11,913	73 bp	+	–
ND5	Protein-coding gene	11,914	13,752	1,839 bp	+	41.3%
ND6	Protein-coding gene	13,748	14,269	522 bp	−	45.6%
tRNA-Glu	Transfer RNA	14,270	14,338	69 bp	−	–
CYTB	Protein-coding gene	14,343	15,483	1,141 bp	+	42.8%
tRNA-Thr	Transfer RNA	15,484	15,554	71 bp	+	–
tRNA-Pro	Transfer RNA	15,615	15,683	69 bp	−	–
D-loop	Control region	15,684	16,556	873 bp	–	36.1%