MitoAge

Pomatoschistus minutus

Freckled goby

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Maximum lifespan
3 yr
AnAge record
mtDNA size
16,396 bp
RefSeq NC_060619.1
GC content
49.48%
Whole genome
Non-coding
817 bp
D-loop 762 bp

Where Freckled goby sits among 2,335 species

Whole-genome GC content against maximum lifespan. Freckled goby has the 2,190th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Freckled goby
  • This species
  • Other ray-finned fishes
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,396 bp
GC skew (G − C) / (G + C)
−0.216
AT skew (A − T) / (A + T)
−0.004

Life history

Maximum lifespan
3 years
Female sexual maturity
365 days
Male sexual maturity
365 days

Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 04187)

About this record

Lifespan source
AnAge build 15
Based on
an animal in the wild
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
New in build 2
In the database since
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,396 bp
Protein-coding11,410 bp
12S rRNA950 bp
16S rRNA1,671 bp
All tRNA1,548 bp
D-loop762 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1975 bp19.9%27.8%19.8%32.5%52.31%−0.243−0.166
ND2NADH dehydrogenase subunit 21,048 bp21.5%24.5%17.8%36.2%54.01%−0.339−0.066
COX1Cytochrome c oxidase subunit I1,554 bp22.5%28.1%20.0%29.4%49.42%−0.190−0.112
COX2Cytochrome c oxidase subunit II691 bp26.6%23.3%17.2%32.9%50.07%−0.312+0.067
ATP8ATP synthase F0 subunit 8165 bp28.5%24.2%13.3%33.9%47.27%−0.436+0.080
ATP6ATP synthase F0 subunit 6683 bp21.1%29.0%17.0%32.9%49.93%−0.320−0.158
COX3Cytochrome c oxidase subunit III784 bp23.3%26.8%20.0%29.8%49.87%−0.197−0.069
ND3NADH dehydrogenase subunit 3349 bp20.1%28.4%18.1%33.5%51.58%−0.300−0.172
ND4LNADH dehydrogenase subunit 4L297 bp19.9%29.3%17.8%33.0%50.84%−0.298−0.192
ND4NADH dehydrogenase subunit 41,380 bp20.9%26.4%20.0%32.6%52.61%−0.240−0.116
ND5NADH dehydrogenase subunit 51,839 bp23.3%27.8%18.2%30.7%48.89%−0.255−0.089
ND6NADH dehydrogenase subunit 6522 bp31.0%12.6%20.3%36.0%56.32%−0.279+0.421
CYTBCytochrome b1,141 bp21.3%29.9%17.3%31.6%48.82%−0.293−0.168
12S rRNA12S ribosomal RNA950 bp31.4%20.7%22.1%25.8%47.90%−0.077+0.204
16S rRNA16S ribosomal RNA1,671 bp32.4%19.5%21.7%26.4%48.06%−0.098+0.249
D-loopControl region (D-loop)762 bp31.4%29.0%18.6%21.0%39.63%−0.060+0.039

Codon usage

Counts per codon, darker is more frequent

3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.3%
UUU110
UUC131
Leu L17.1%
UUA45
UUG40
CUU170
CUC146
CUA139
CUG112
Ile I6.4%
AUU106
AUC139
Met M4.3%
AUA58
AUG105
Val V6.4%
GUU66
GUC62
GUA70
GUG44
Ser S6.3%
UCU71
UCC52
UCA37
UCG21
AGU12
AGC46
Pro P6.0%
CCU40
CCC119
CCA48
CCG22
Thr T7.7%
ACU56
ACC129
ACA80
ACG28
Ala A9.6%
GCU74
GCC165
GCA100
GCG27
Tyr Y2.8%
UAU30
UAC78
His H2.9%
CAU9
CAC100
Gln Q2.7%
CAA55
CAG48
Asn N2.9%
AAU25
AAC87
Lys K1.8%
AAA42
AAG28
Asp D1.9%
GAU19
GAC53
Glu E2.4%
GAA42
GAG51
Cys C0.7%
UGU7
UGC19
Trp W3.0%
UGA63
UGG51
Arg R2.0%
CGU10
CGC18
CGA31
CGG17
Gly G6.5%
GGU24
GGC93
GGA51
GGG79
Stop 0.2%
UAA4
UAG3
AGA0
AGG0

Genome map

38 annotated features in NC_060619.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (49.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16868 bp+–
12S rRNARibosomal RNA691,018950 bp+47.9%
tRNA-ValTransfer RNA1,0191,09072 bp+–
16S rRNARibosomal RNA1,0912,7611,671 bp+48.1%
tRNA-Leu (UUR)Transfer RNA2,7622,83675 bp+–
ND1Protein-coding gene2,8373,811975 bp+52.3%
tRNA-IleTransfer RNA3,8133,88068 bp+–
tRNA-GlnTransfer RNA3,8803,95071 bp−–
tRNA-MetTransfer RNA3,9504,01869 bp+–
ND2Protein-coding gene4,0195,0661,048 bp+54.0%
tRNA-TrpTransfer RNA5,0675,13771 bp+–
tRNA-AlaTransfer RNA5,1395,20769 bp−–
tRNA-AsnTransfer RNA5,2095,28173 bp−–
tRNA-CysTransfer RNA5,3175,38165 bp−–
tRNA-TyrTransfer RNA5,3825,45271 bp−–
COX1Protein-coding gene5,4547,0071,554 bp+49.4%
tRNA-Ser (UCN)Transfer RNA7,0087,07871 bp−–
tRNA-AspTransfer RNA7,0827,15069 bp+–
COX2Protein-coding gene7,1547,844691 bp+50.1%
tRNA-LysTransfer RNA7,8457,91975 bp+–
ATP8Protein-coding gene7,9218,085165 bp+47.3%
ATP6Protein-coding gene8,0798,761683 bp+49.9%
COX3Protein-coding gene8,7629,545784 bp+49.9%
tRNA-GlyTransfer RNA9,5469,61772 bp+–
ND3Protein-coding gene9,6189,966349 bp+51.6%
tRNA-ArgTransfer RNA9,96710,03569 bp+–
ND4LProtein-coding gene10,03610,332297 bp+50.8%
ND4Protein-coding gene10,32611,7051,380 bp+52.6%
tRNA-HisTransfer RNA11,70711,77569 bp+–
tRNA-Ser (AGY)Transfer RNA11,77611,84469 bp+–
tRNA-Leu (CUN)Transfer RNA11,84811,92073 bp+–
ND5Protein-coding gene11,92113,7591,839 bp+48.9%
ND6Protein-coding gene13,75614,277522 bp−56.3%
tRNA-GluTransfer RNA14,27814,34669 bp−–
CYTBProtein-coding gene14,35215,4921,141 bp+48.8%
tRNA-ThrTransfer RNA15,49315,56472 bp+–
tRNA-ProTransfer RNA15,56515,63470 bp−–
D-loopControl region15,63516,396762 bp–39.6%

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