Pristipomoides multidens
Goldbanded jobfish
GC content
45.61%
Whole genome
Non-coding
910 bp
D-loop 826 bp
Where Goldbanded jobfish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Goldbanded jobfish has the 442nd longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,507 bp
- GC skew (G − C) / (G + C)
- −0.284
- AT skew (A − T) / (A + T)
- +0.041
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,507 bp
Protein-coding11,416 bp
12S rRNA952 bp
16S rRNA1,699 bp
All tRNA1,541 bp
D-loop826 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 45.95% | −0.357 | −0.021 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 47.23% | −0.494 | +0.069 | |||||
| COX1Cytochrome c oxidase subunit I | 1,560 bp | 45.58% | −0.176 | −0.091 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 42.26% | −0.274 | −0.003 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 44.05% | −0.486 | +0.128 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 44.59% | −0.430 | −0.018 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 48.15% | −0.312 | −0.042 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 46.42% | −0.358 | −0.251 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 46.47% | −0.406 | −0.082 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 46.63% | −0.354 | −0.020 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,838 bp | 43.63% | −0.392 | +0.027 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 46.17% | −0.427 | +0.431 | |||||
| CYTBCytochrome b | 1,142 bp | 48.16% | −0.378 | −0.061 | |||||
| 12S rRNA12S ribosomal RNA | 952 bp | 46.95% | −0.092 | +0.160 | |||||
| 16S rRNA16S ribosomal RNA | 1,699 bp | 46.50% | −0.104 | +0.210 | |||||
| D-loopControl region (D-loop) | 826 bp | 40.68% | −0.208 | +0.049 |
Codon usage
Counts per codon, darker is more frequent3,809 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU113
UUC117
Leu L17.5%
UUA106
UUG16
CUU149
CUC167
CUA187
CUG43
Ile I6.8%
AUU163
AUC97
Met M4.0%
AUA95
AUG59
Val V5.9%
GUU68
GUC63
GUA76
GUG19
Ser S6.4%
UCU48
UCC70
UCA55
UCG13
AGU7
AGC49
Pro P5.8%
CCU61
CCC102
CCA54
CCG5
Thr T8.1%
ACU38
ACC127
ACA124
ACG18
Ala A9.0%
GCU65
GCC157
GCA110
GCG11
Tyr Y2.9%
UAU43
UAC69
His H2.8%
CAU31
CAC74
Gln Q2.6%
CAA87
CAG12
Asn N3.2%
AAU42
AAC80
Lys K1.9%
AAA71
AAG3
Asp D1.9%
GAU15
GAC57
Glu E2.8%
GAA81
GAG24
Cys C0.6%
UGU10
UGC14
Trp W3.2%
UGA104
UGG16
Arg R2.0%
CGU6
CGC9
CGA55
CGG6
Gly G6.4%
GGU31
GGC89
GGA84
GGG38
Stop 0.2%
UAA4
UAG0
AGA1
AGG1
Genome map
38 annotated features in NC_022177.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,020 | 952 bp | + | 47.0% |
| tRNA-Val | Transfer RNA | 1,021 | 1,094 | 74 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,095 | 2,793 | 1,699 bp | + | 46.5% |
| tRNA-Leu (UUR) | Transfer RNA | 2,794 | 2,867 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,868 | 3,842 | 975 bp | + | 46.0% |
| tRNA-Ile | Transfer RNA | 3,864 | 3,915 | 52 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,915 | 3,985 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,985 | 4,053 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,054 | 5,099 | 1,046 bp | + | 47.2% |
| tRNA-Trp | Transfer RNA | 5,100 | 5,172 | 73 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,173 | 5,241 | 69 bp | + | – |
| tRNA-Asn | Transfer RNA | 5,243 | 5,315 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,356 | 5,422 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,423 | 5,493 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,495 | 7,054 | 1,560 bp | + | 45.6% |
| tRNA-Ser (UCN) | Transfer RNA | 7,044 | 7,116 | 73 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,120 | 7,191 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,199 | 7,889 | 691 bp | + | 42.3% |
| tRNA-Lys | Transfer RNA | 7,890 | 7,963 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,966 | 8,133 | 168 bp | + | 44.1% |
| ATP6 | Protein-coding gene | 8,124 | 8,807 | 684 bp | + | 44.6% |
| COX3 | Protein-coding gene | 8,807 | 9,591 | 785 bp | + | 48.2% |
| tRNA-Gly | Transfer RNA | 9,592 | 9,663 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,664 | 10,012 | 349 bp | + | 46.4% |
| tRNA-Arg | Transfer RNA | 10,013 | 10,082 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,083 | 10,379 | 297 bp | + | 46.5% |
| ND4 | Protein-coding gene | 10,373 | 11,753 | 1,381 bp | + | 46.6% |
| tRNA-His | Transfer RNA | 11,754 | 11,822 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,823 | 11,891 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,896 | 11,968 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,969 | 13,806 | 1,838 bp | + | 43.6% |
| ND6 | Protein-coding gene | 13,803 | 14,324 | 522 bp | − | 46.2% |
| tRNA-Glu | Transfer RNA | 14,325 | 14,393 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,399 | 15,540 | 1,142 bp | + | 48.2% |
| tRNA-Thr | Transfer RNA | 15,541 | 15,612 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,612 | 15,681 | 70 bp | + | – |
| D-loop | Control region | 15,682 | 16,507 | 826 bp | – | 40.7% |