MitoAge

Procavia capensis

Rock hyrax

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Maximum lifespan
14.8 yr
AnAge record
mtDNA size
16,743 bp
RefSeq NC_004919.1
GC content
41.05%
Whole genome
Non-coding
1,367 bp
D-loop 1,285 bp

Where Rock hyrax sits among 2,335 species

Whole-genome GC content against maximum lifespan. Rock hyrax has the 1,259th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Rock hyrax
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,743 bp
GC skew (G − C) / (G + C)
−0.355
AT skew (A − T) / (A + T)
+0.168

Life history

Maximum lifespan
14.8 years
Adult weight
3.6 kg
Birth weight
205 g
Basal metabolic rate
4.954 W
Body temperature
37 °C
Female sexual maturity
500 days
Male sexual maturity
500 days
Gestation or incubation
215 days
Litter or clutch size
3
Litters per year
1
Postnatal growth rate
0.0112 per day

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02591)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,743 bp
Protein-coding11,360 bp
12S rRNA951 bp
16S rRNA1,570 bp
All tRNA1,506 bp
D-loop1,285 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1955 bp34.1%24.5%12.1%29.2%41.36%−0.413+0.164
ND2NADH dehydrogenase subunit 21,044 bp37.3%24.3%7.8%30.7%38.41%−0.596+0.210
COX1Cytochrome c oxidase subunit I1,541 bp28.4%27.1%16.9%27.6%44.45%−0.241+0.023
COX2Cytochrome c oxidase subunit II684 bp34.4%25.4%13.3%26.9%40.21%−0.338+0.149
ATP8ATP synthase F0 subunit 8204 bp39.7%24.0%6.4%29.9%36.28%−0.649+0.246
ATP6ATP synthase F0 subunit 6681 bp31.9%25.3%12.2%30.7%42.88%−0.432+0.116
COX3Cytochrome c oxidase subunit III784 bp29.0%25.0%16.6%29.5%46.05%−0.280+0.073
ND3NADH dehydrogenase subunit 3346 bp30.1%25.4%12.7%31.8%44.51%−0.429+0.083
ND4LNADH dehydrogenase subunit 4L297 bp29.3%30.3%11.8%28.6%40.40%−0.417−0.017
ND4NADH dehydrogenase subunit 41,378 bp34.3%24.5%10.2%30.9%41.15%−0.503+0.166
ND5NADH dehydrogenase subunit 51,818 bp35.0%25.6%10.2%29.2%39.38%−0.483+0.156
ND6NADH dehydrogenase subunit 6543 bp43.6%16.6%7.6%32.2%39.78%−0.620+0.450
CYTBCytochrome b1,140 bp32.0%24.7%12.6%30.6%43.25%−0.416+0.128
12S rRNA12S ribosomal RNA951 bp36.9%22.1%17.5%23.6%41.01%−0.149+0.251
16S rRNA16S ribosomal RNA1,570 bp38.0%22.3%17.1%22.5%39.68%−0.136+0.261
D-loopControl region (D-loop)1,285 bp35.3%24.5%13.5%26.7%40.23%−0.327+0.180

Codon usage

Counts per codon, darker is more frequent

3,803 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.6%
UUU68
UUC146
Leu L15.9%
UUA82
UUG25
CUU54
CUC70
CUA328
CUG46
Ile I8.5%
AUU129
AUC194
Met M6.6%
AUA203
AUG47
Val V4.8%
GUU30
GUC30
GUA100
GUG22
Ser S7.1%
UCU38
UCC70
UCA110
UCG3
AGU12
AGC38
Pro P5.4%
CCU24
CCC69
CCA102
CCG10
Thr T9.3%
ACU53
ACC146
ACA146
ACG8
Ala A6.1%
GCU30
GCC104
GCA93
GCG5
Tyr Y3.6%
UAU39
UAC99
His H2.6%
CAU21
CAC78
Gln Q2.2%
CAA76
CAG9
Asn N4.2%
AAU36
AAC125
Lys K2.6%
AAA92
AAG5
Asp D1.7%
GAU22
GAC42
Glu E2.6%
GAA81
GAG18
Cys C0.7%
UGU5
UGC21
Trp W2.7%
UGA98
UGG6
Arg R1.8%
CGU8
CGC9
CGA48
CGG5
Gly G5.7%
GGU31
GGC42
GGA117
GGG27
Stop 0.2%
UAA7
UAG1
AGA0
AGG0

Genome map

38 annotated features in NC_004919.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (41.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA17373 bp+–
12S rRNARibosomal RNA771,027951 bp+41.0%
tRNA-ValTransfer RNA1,0281,09568 bp+–
16S rRNARibosomal RNA1,0962,6651,570 bp+39.7%
tRNA-Leu (UUR)Transfer RNA2,6672,74175 bp+–
ND1Protein-coding gene2,7423,696955 bp+41.4%
tRNA-IleTransfer RNA3,6973,76468 bp+–
tRNA-GlnTransfer RNA3,7623,83372 bp−–
tRNA-MetTransfer RNA3,8343,90269 bp+–
ND2Protein-coding gene3,9034,9461,044 bp+38.4%
tRNA-TrpTransfer RNA4,9455,01470 bp+–
tRNA-AlaTransfer RNA5,0195,08769 bp−–
tRNA-AsnTransfer RNA5,0885,16073 bp+–
tRNA-CysTransfer RNA5,1945,25865 bp−–
tRNA-TyrTransfer RNA5,2595,32466 bp−–
COX1Protein-coding gene5,3326,8721,541 bp+44.5%
tRNA-Ser (UCN)Transfer RNA6,8746,94269 bp−–
tRNA-AspTransfer RNA6,9487,01669 bp+–
COX2Protein-coding gene7,0177,700684 bp+40.2%
tRNA-LysTransfer RNA7,7027,77069 bp+–
ATP8Protein-coding gene7,7717,974204 bp+36.3%
ATP6Protein-coding gene7,9328,612681 bp+42.9%
COX3Protein-coding gene8,6129,395784 bp+46.1%
tRNA-GlyTransfer RNA9,3969,46469 bp+–
ND3Protein-coding gene9,4659,810346 bp+44.5%
tRNA-ArgTransfer RNA9,8119,87666 bp+–
ND4LProtein-coding gene9,87810,174297 bp+40.4%
ND4Protein-coding gene10,16811,5451,378 bp+41.2%
tRNA-HisTransfer RNA11,54611,61469 bp+–
tRNA-Ser (AGY)Transfer RNA11,61511,67157 bp+–
tRNA-Leu (CUN)Transfer RNA11,67211,74170 bp+–
ND5Protein-coding gene11,73313,5501,818 bp+39.4%
ND6Protein-coding gene13,54714,089543 bp−39.8%
tRNA-GluTransfer RNA14,09014,15869 bp−–
CYTBProtein-coding gene14,17015,3091,140 bp+43.3%
tRNA-ThrTransfer RNA15,32315,39068 bp+–
tRNA-ProTransfer RNA15,39315,45866 bp−–
D-loopControl region15,45916,7431,285 bp–40.2%

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