Prochilodus lineatus
Streaked prochilod
GC content
44.48%
Whole genome
Non-coding
1,111 bp
D-loop 1,041 bp
Where Streaked prochilod sits among 2,335 species
Whole-genome GC content against maximum lifespan. Streaked prochilod has the 1,997th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,699 bp
- GC skew (G − C) / (G + C)
- −0.289
- AT skew (A − T) / (A + T)
- +0.078
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- questionable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,699 bp
Protein-coding11,400 bp
12S rRNA952 bp
16S rRNA1,679 bp
All tRNA1,557 bp
D-loop1,041 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 43.80% | −0.344 | +0.015 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 45.17% | −0.449 | +0.155 | |||||
| COX1Cytochrome c oxidase subunit I | 1,548 bp | 45.03% | −0.197 | −0.081 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 43.13% | −0.282 | +0.069 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 44.64% | −0.493 | +0.075 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 42.11% | −0.424 | −0.015 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 47.39% | −0.296 | −0.022 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 44.13% | −0.390 | −0.067 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 48.82% | −0.352 | −0.053 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 44.68% | −0.371 | +0.055 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 45.24% | −0.421 | +0.076 | |||||
| ND6NADH dehydrogenase subunit 6 | 519 bp | 45.47% | −0.492 | +0.484 | |||||
| CYTBCytochrome b | 1,141 bp | 45.49% | −0.372 | +0.013 | |||||
| 12S rRNA12S ribosomal RNA | 952 bp | 48.11% | −0.127 | +0.231 | |||||
| 16S rRNA16S ribosomal RNA | 1,679 bp | 45.33% | −0.112 | +0.264 | |||||
| D-loopControl region (D-loop) | 1,041 bp | 34.97% | −0.220 | +0.001 |
Codon usage
Counts per codon, darker is more frequent3,805 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU98
UUC135
Leu L16.9%
UUA85
UUG19
CUU115
CUC127
CUA252
CUG46
Ile I7.1%
AUU160
AUC112
Met M4.2%
AUA99
AUG61
Val V5.8%
GUU61
GUC52
GUA90
GUG18
Ser S6.2%
UCU42
UCC70
UCA68
UCG3
AGU12
AGC42
Pro P5.6%
CCU38
CCC92
CCA80
CCG4
Thr T8.1%
ACU44
ACC118
ACA140
ACG7
Ala A9.1%
GCU59
GCC158
GCA120
GCG9
Tyr Y3.0%
UAU57
UAC58
His H2.7%
CAU22
CAC82
Gln Q2.7%
CAA92
CAG9
Asn N3.2%
AAU36
AAC84
Lys K2.0%
AAA70
AAG7
Asp D2.0%
GAU15
GAC63
Glu E2.6%
GAA86
GAG14
Cys C0.7%
UGU9
UGC16
Trp W3.2%
UGA110
UGG12
Arg R2.0%
CGU10
CGC12
CGA47
CGG6
Gly G6.4%
GGU34
GGC67
GGA112
GGG32
Stop 0.2%
UAA7
UAG0
AGA0
AGG0
Genome map
38 annotated features in NC_024939.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (44.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,020 | 952 bp | + | 48.1% |
| tRNA-Val | Transfer RNA | 1,021 | 1,092 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,093 | 2,771 | 1,679 bp | + | 45.3% |
| tRNA-Leu (UUR) | Transfer RNA | 2,772 | 2,846 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,847 | 3,821 | 975 bp | + | 43.8% |
| tRNA-Ile | Transfer RNA | 3,830 | 3,901 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,900 | 3,970 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,970 | 4,038 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,039 | 5,083 | 1,045 bp | + | 45.2% |
| tRNA-Trp | Transfer RNA | 5,084 | 5,155 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,158 | 5,226 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,228 | 5,300 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,332 | 5,398 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,400 | 5,470 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,472 | 7,019 | 1,548 bp | + | 45.0% |
| tRNA-Ser (UCN) | Transfer RNA | 7,020 | 7,090 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,096 | 7,168 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,183 | 7,873 | 691 bp | + | 43.1% |
| tRNA-Lys | Transfer RNA | 7,874 | 7,948 | 75 bp | + | – |
| ATP8 | Protein-coding gene | 7,950 | 8,117 | 168 bp | + | 44.6% |
| ATP6 | Protein-coding gene | 8,108 | 8,791 | 684 bp | + | 42.1% |
| COX3 | Protein-coding gene | 8,791 | 9,575 | 785 bp | + | 47.4% |
| tRNA-Gly | Transfer RNA | 9,576 | 9,647 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,648 | 9,996 | 349 bp | + | 44.1% |
| tRNA-Arg | Transfer RNA | 9,997 | 10,066 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,067 | 10,363 | 297 bp | + | 48.8% |
| ND4 | Protein-coding gene | 10,357 | 11,737 | 1,381 bp | + | 44.7% |
| tRNA-His | Transfer RNA | 11,738 | 11,806 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,807 | 11,874 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,876 | 11,948 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,949 | 13,787 | 1,839 bp | + | 45.2% |
| ND6 | Protein-coding gene | 13,784 | 14,302 | 519 bp | − | 45.5% |
| tRNA-Glu | Transfer RNA | 14,303 | 14,371 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,377 | 15,517 | 1,141 bp | + | 45.5% |
| tRNA-Thr | Transfer RNA | 15,518 | 15,589 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,589 | 15,658 | 70 bp | + | – |
| D-loop | Control region | 15,659 | 16,699 | 1,041 bp | – | 35.0% |