Procypris rabaudi
Rock carp
GC content
42.53%
Whole genome
Non-coding
1,003 bp
D-loop 943 bp
Where Rock carp sits among 2,335 species
Whole-genome GC content against maximum lifespan. Rock carp has the 1,769th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,595 bp
- GC skew (G − C) / (G + C)
- −0.266
- AT skew (A − T) / (A + T)
- +0.123
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- questionable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,595 bp
Protein-coding11,391 bp
12S rRNA958 bp
16S rRNA1,683 bp
All tRNA1,560 bp
D-loop943 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 43.59% | −0.332 | +0.095 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 42.87% | −0.469 | +0.206 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 44.04% | −0.204 | −0.037 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 40.81% | −0.220 | +0.076 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 38.79% | −0.406 | +0.129 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 40.70% | −0.338 | +0.062 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 45.10% | −0.249 | +0.016 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 40.12% | −0.329 | +0.014 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 44.78% | −0.338 | +0.012 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 43.23% | −0.343 | +0.089 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,824 bp | 41.17% | −0.422 | +0.152 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 46.17% | −0.436 | +0.552 | |||||
| CYTBCytochrome b | 1,141 bp | 41.89% | −0.343 | +0.056 | |||||
| 12S rRNA12S ribosomal RNA | 958 bp | 48.12% | −0.102 | +0.252 | |||||
| 16S rRNA16S ribosomal RNA | 1,683 bp | 42.78% | −0.081 | +0.296 | |||||
| D-loopControl region (D-loop) | 943 bp | 31.60% | −0.175 | +0.017 |
Codon usage
Counts per codon, darker is more frequent3,800 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU95
UUC133
Leu L16.4%
UUA110
UUG11
CUU96
CUC79
CUA290
CUG37
Ile I7.8%
AUU156
AUC139
Met M4.6%
AUA137
AUG37
Val V5.8%
GUU60
GUC31
GUA103
GUG27
Ser S6.2%
UCU32
UCC52
UCA96
UCG7
AGU12
AGC36
Pro P5.6%
CCU24
CCC50
CCA125
CCG12
Thr T8.0%
ACU29
ACC110
ACA157
ACG9
Ala A8.8%
GCU60
GCC139
GCA129
GCG7
Tyr Y3.0%
UAU61
UAC54
His H2.8%
CAU22
CAC83
Gln Q2.7%
CAA94
CAG7
Asn N3.3%
AAU34
AAC91
Lys K2.0%
AAA70
AAG6
Asp D1.9%
GAU22
GAC51
Glu E2.7%
GAA95
GAG8
Cys C0.7%
UGU6
UGC19
Trp W3.2%
UGA110
UGG10
Arg R2.0%
CGU11
CGC9
CGA49
CGG7
Gly G6.5%
GGU28
GGC44
GGA138
GGG38
Stop 0.2%
UAA5
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_011192.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (42.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,027 | 958 bp | + | 48.1% |
| tRNA-Val | Transfer RNA | 1,028 | 1,099 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,100 | 2,782 | 1,683 bp | + | 42.8% |
| tRNA-Leu (UUR) | Transfer RNA | 2,783 | 2,858 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,860 | 3,834 | 975 bp | + | 43.6% |
| tRNA-Ile | Transfer RNA | 3,839 | 3,910 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,909 | 3,979 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,981 | 4,049 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,050 | 5,094 | 1,045 bp | + | 42.9% |
| tRNA-Trp | Transfer RNA | 5,095 | 5,165 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,168 | 5,236 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,238 | 5,310 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,343 | 5,409 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,409 | 5,479 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,481 | 7,031 | 1,551 bp | + | 44.0% |
| tRNA-Ser (UCN) | Transfer RNA | 7,032 | 7,102 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,106 | 7,177 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,183 | 7,873 | 691 bp | + | 40.8% |
| tRNA-Lys | Transfer RNA | 7,874 | 7,950 | 77 bp | + | – |
| ATP8 | Protein-coding gene | 7,952 | 8,116 | 165 bp | + | 38.8% |
| ATP6 | Protein-coding gene | 8,110 | 8,792 | 683 bp | + | 40.7% |
| COX3 | Protein-coding gene | 8,793 | 9,577 | 785 bp | + | 45.1% |
| tRNA-Gly | Transfer RNA | 9,578 | 9,649 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,650 | 9,998 | 349 bp | + | 40.1% |
| tRNA-Arg | Transfer RNA | 9,999 | 10,068 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,069 | 10,365 | 297 bp | + | 44.8% |
| ND4 | Protein-coding gene | 10,359 | 11,739 | 1,381 bp | + | 43.2% |
| tRNA-His | Transfer RNA | 11,740 | 11,808 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,809 | 11,877 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,879 | 11,951 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,955 | 13,778 | 1,824 bp | + | 41.2% |
| ND6 | Protein-coding gene | 13,775 | 14,296 | 522 bp | − | 46.2% |
| tRNA-Glu | Transfer RNA | 14,297 | 14,365 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,371 | 15,511 | 1,141 bp | + | 41.9% |
| tRNA-Thr | Transfer RNA | 15,512 | 15,583 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,583 | 15,652 | 70 bp | − | – |
| D-loop | Control region | 15,653 | 16,595 | 943 bp | – | 31.6% |