MitoAge

Prosopium cylindraceum

Round whitefish

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Maximum lifespan
16 yr
AnAge record
mtDNA size
16,526 bp
RefSeq NC_020764.1
GC content
46.44%
Whole genome
Non-coding
934 bp
D-loop 866 bp

Where Round whitefish sits among 2,335 species

Whole-genome GC content against maximum lifespan. Round whitefish has the 1,152nd longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Round whitefish
  • This species
  • Other ray-finned fishes
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,526 bp
GC skew (G − C) / (G + C)
−0.221
AT skew (A − T) / (A + T)
+0.019

Life history

Maximum lifespan
16 years
Adult weight
1.5 kg
Female sexual maturity
3 years
Male sexual maturity
3 years
Gestation or incubation
140 days

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04469)

About this record

Lifespan source
AnAge build 15
Based on
an animal in the wild
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,526 bp
Protein-coding11,411 bp
12S rRNA947 bp
16S rRNA1,679 bp
All tRNA1,555 bp
D-loop866 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1975 bp23.4%28.5%17.6%30.5%48.10%−0.267−0.099
ND2NADH dehydrogenase subunit 21,050 bp26.3%27.4%15.7%30.6%46.29%−0.321−0.021
COX1Cytochrome c oxidase subunit I1,551 bp24.6%29.9%19.1%26.4%45.58%−0.160−0.097
COX2Cytochrome c oxidase subunit II691 bp26.8%28.4%17.1%27.8%44.86%−0.239−0.029
ATP8ATP synthase F0 subunit 8168 bp28.0%24.4%14.3%33.3%47.62%−0.400+0.068
ATP6ATP synthase F0 subunit 6684 bp25.1%30.0%14.3%30.6%44.88%−0.362−0.088
COX3Cytochrome c oxidase subunit III785 bp24.5%27.4%17.3%30.8%48.15%−0.280−0.057
ND3NADH dehydrogenase subunit 3349 bp21.5%30.7%17.8%30.1%47.85%−0.257−0.176
ND4LNADH dehydrogenase subunit 4L297 bp22.9%26.6%18.5%32.0%50.51%−0.267−0.075
ND4NADH dehydrogenase subunit 41,381 bp26.7%27.7%16.1%29.5%45.62%−0.295−0.017
ND5NADH dehydrogenase subunit 51,839 bp28.1%27.4%15.0%29.5%44.48%−0.328+0.013
ND6NADH dehydrogenase subunit 6522 bp36.8%14.9%14.9%33.3%48.28%−0.381+0.422
CYTBCytochrome b1,141 bp24.5%29.9%16.6%29.1%45.66%−0.274−0.100
12S rRNA12S ribosomal RNA947 bp29.4%19.6%23.4%27.6%51.00%−0.081+0.198
16S rRNA16S ribosomal RNA1,679 bp32.2%19.7%23.2%25.0%48.12%−0.037+0.240
D-loopControl region (D-loop)866 bp29.3%29.6%17.0%24.1%41.11%−0.174−0.004

Codon usage

Counts per codon, darker is more frequent

3,809 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.9%
UUU110
UUC113
Leu L17.1%
UUA100
UUG27
CUU185
CUC105
CUA169
CUG64
Ile I6.9%
AUU152
AUC112
Met M4.1%
AUA85
AUG70
Val V6.5%
GUU69
GUC54
GUA89
GUG34
Ser S6.3%
UCU53
UCC61
UCA60
UCG13
AGU10
AGC43
Pro P5.6%
CCU28
CCC102
CCA70
CCG12
Thr T7.9%
ACU60
ACC112
ACA113
ACG17
Ala A9.1%
GCU77
GCC157
GCA97
GCG16
Tyr Y2.9%
UAU57
UAC55
His H2.7%
CAU19
CAC85
Gln Q2.6%
CAA69
CAG31
Asn N3.0%
AAU38
AAC76
Lys K2.0%
AAA52
AAG23
Asp D2.1%
GAU31
GAC48
Glu E2.7%
GAA69
GAG35
Cys C0.7%
UGU11
UGC16
Trp W3.2%
UGA97
UGG25
Arg R2.0%
CGU4
CGC12
CGA47
CGG13
Gly G6.5%
GGU38
GGC74
GGA85
GGG52
Stop 0.2%
UAA5
UAG3
AGA0
AGG0

Genome map

38 annotated features in NC_020764.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (46.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16868 bp+–
12S rRNARibosomal RNA691,015947 bp+51.0%
tRNA-ValTransfer RNA1,0161,08772 bp+–
16S rRNARibosomal RNA1,0882,7661,679 bp+48.1%
tRNA-Leu (UUR)Transfer RNA2,7672,84175 bp+–
ND1Protein-coding gene2,8423,816975 bp+48.1%
tRNA-IleTransfer RNA3,8243,89572 bp+–
tRNA-GlnTransfer RNA3,8933,96371 bp−–
tRNA-MetTransfer RNA3,9634,03169 bp+–
ND2Protein-coding gene4,0325,0811,050 bp+46.3%
tRNA-TrpTransfer RNA5,0835,15472 bp+–
tRNA-AlaTransfer RNA5,1565,22469 bp−–
tRNA-AsnTransfer RNA5,2265,29873 bp−–
tRNA-CysTransfer RNA5,3335,39967 bp−–
tRNA-TyrTransfer RNA5,4005,47071 bp−–
COX1Protein-coding gene5,4727,0221,551 bp+45.6%
tRNA-Ser (UCN)Transfer RNA7,0237,09371 bp−–
tRNA-AspTransfer RNA7,0987,17174 bp+–
COX2Protein-coding gene7,1867,876691 bp+44.9%
tRNA-LysTransfer RNA7,8777,95074 bp+–
ATP8Protein-coding gene7,9528,119168 bp+47.6%
ATP6Protein-coding gene8,1108,793684 bp+44.9%
COX3Protein-coding gene8,7939,577785 bp+48.2%
tRNA-GlyTransfer RNA9,5789,64770 bp+–
ND3Protein-coding gene9,6489,996349 bp+47.9%
tRNA-ArgTransfer RNA9,99710,06670 bp+–
ND4LProtein-coding gene10,06710,363297 bp+50.5%
ND4Protein-coding gene10,35711,7371,381 bp+45.6%
tRNA-HisTransfer RNA11,73811,80669 bp+–
tRNA-Ser (AGY)Transfer RNA11,80711,87569 bp+–
tRNA-Leu (CUN)Transfer RNA11,87711,94973 bp+–
ND5Protein-coding gene11,95013,7881,839 bp+44.5%
ND6Protein-coding gene13,78514,306522 bp−48.3%
tRNA-GluTransfer RNA14,30714,37569 bp−–
CYTBProtein-coding gene14,37915,5191,141 bp+45.7%
tRNA-ThrTransfer RNA15,52015,59172 bp+–
tRNA-ProTransfer RNA15,59115,66070 bp−–
D-loopControl region15,66116,526866 bp–41.1%

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