Prosopium williamsoni

Mountain whitefish

Maximum lifespan

17 yr

AnAge record

mtDNA size

16,754 bp

RefSeq NC_020763.1

GC content

46.97%

Whole genome

Non-coding

1,162 bp

D-loop 1,093 bp

Where Mountain whitefish sits among 2,335 species

Whole-genome GC content against maximum lifespan. Mountain whitefish has the 1,090th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,754 bp

GC skew (G − C) / (G + C): −0.214
AT skew (A − T) / (A + T): +0.006

Life history

Maximum lifespan: 17 years
Adult weight: 1.6 kg

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04472)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,754 bp

Protein-coding11,411 bp

12S rRNA947 bp

16S rRNA1,679 bp

All tRNA1,555 bp

D-loop1,093 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Prosopium williamsoni genes

ND1NADH dehydrogenase subunit 1	975 bp	21.6%	28.1%	18.9%	31.4%	50.26%	−0.249	−0.130
ND2NADH dehydrogenase subunit 2	1,050 bp	25.6%	27.1%	16.5%	30.8%	47.24%	−0.302	−0.029
COX1Cytochrome c oxidase subunit I	1,551 bp	23.9%	30.0%	19.7%	26.4%	46.10%	−0.147	−0.112
COX2Cytochrome c oxidase subunit II	691 bp	26.8%	28.4%	16.8%	28.1%	44.86%	−0.252	−0.029
ATP8ATP synthase F0 subunit 8	168 bp	28.0%	23.8%	14.3%	33.9%	48.21%	−0.407	+0.080
ATP6ATP synthase F0 subunit 6	684 bp	24.6%	30.0%	14.6%	30.8%	45.47%	−0.357	−0.099
COX3Cytochrome c oxidase subunit III	785 bp	23.8%	27.6%	17.7%	30.8%	48.54%	−0.270	−0.074
ND3NADH dehydrogenase subunit 3	349 bp	20.6%	29.2%	18.3%	31.8%	50.14%	−0.269	−0.172
ND4LNADH dehydrogenase subunit 4L	297 bp	21.5%	25.9%	20.5%	32.0%	52.53%	−0.218	−0.092
ND4NADH dehydrogenase subunit 4	1,381 bp	25.6%	27.7%	16.9%	29.9%	46.78%	−0.279	−0.039
ND5NADH dehydrogenase subunit 5	1,839 bp	27.0%	28.1%	15.9%	29.1%	44.97%	−0.294	−0.020
ND6NADH dehydrogenase subunit 6	522 bp	37.0%	14.8%	15.5%	32.8%	48.28%	−0.357	+0.430
CYTBCytochrome b	1,141 bp	23.0%	30.1%	17.3%	29.5%	46.80%	−0.262	−0.133
12S rRNA12S ribosomal RNA	947 bp	29.5%	19.9%	23.4%	27.2%	50.69%	−0.075	+0.195
16S rRNA16S ribosomal RNA	1,679 bp	31.9%	19.6%	23.3%	25.2%	48.48%	−0.039	+0.239
D-loopControl region (D-loop)	1,093 bp	30.1%	29.9%	15.1%	24.9%	39.98%	−0.245	+0.003

Codon usage

Counts per codon, darker is more frequent

Gene

3,809 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.9%

UUU119

UUC107

Leu L17.0%

UUA89

UUG35

CUU176

CUC114

CUA168

CUG66

Ile I6.6%

AUU143

AUC108

Met M4.1%

AUA83

AUG75

Val V6.6%

GUU80

GUC54

GUA78

GUG41

Ser S6.2%

UCU53

UCC63

UCA57

UCG12

AGU12

AGC41

Pro P5.6%

CCU37

CCC108

CCA50

CCG18

Thr T7.9%

ACU55

ACC119

ACA100

ACG26

Ala A9.3%

GCU78

GCC162

GCA95

GCG18

Tyr Y2.9%

UAU60

UAC51

His H2.8%

CAU21

CAC84

Gln Q2.7%

CAA65

CAG36

Asn N3.0%

AAU37

AAC76

Lys K2.0%

AAA44

AAG31

Asp D2.1%

GAU28

GAC51

Glu E2.7%

GAA66

GAG36

Cys C0.7%

UGU11

UGC16

Trp W3.2%

UGA92

UGG30

Arg R2.0%

CGU6

CGC11

CGA45

CGG14

Gly G6.6%

GGU36

GGC80

GGA80

GGG54

Stop 0.2%

UAA6

UAG2

AGA0

AGG0

Genome map

38 annotated features in NC_020763.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (47.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Prosopium williamsoni (NC_020763.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	68	68 bp	+	–
12S rRNA	Ribosomal RNA	69	1,015	947 bp	+	50.7%
tRNA-Val	Transfer RNA	1,016	1,087	72 bp	+	–
16S rRNA	Ribosomal RNA	1,088	2,766	1,679 bp	+	48.5%
tRNA-Leu (UUR)	Transfer RNA	2,767	2,841	75 bp	+	–
ND1	Protein-coding gene	2,842	3,816	975 bp	+	50.3%
tRNA-Ile	Transfer RNA	3,825	3,896	72 bp	+	–
tRNA-Gln	Transfer RNA	3,894	3,964	71 bp	−	–
tRNA-Met	Transfer RNA	3,964	4,032	69 bp	+	–
ND2	Protein-coding gene	4,033	5,082	1,050 bp	+	47.2%
tRNA-Trp	Transfer RNA	5,084	5,155	72 bp	+	–
tRNA-Ala	Transfer RNA	5,157	5,225	69 bp	−	–
tRNA-Asn	Transfer RNA	5,227	5,299	73 bp	−	–
tRNA-Cys	Transfer RNA	5,334	5,400	67 bp	−	–
tRNA-Tyr	Transfer RNA	5,401	5,471	71 bp	−	–
COX1	Protein-coding gene	5,473	7,023	1,551 bp	+	46.1%
tRNA-Ser (UCN)	Transfer RNA	7,024	7,094	71 bp	−	–
tRNA-Asp	Transfer RNA	7,099	7,172	74 bp	+	–
COX2	Protein-coding gene	7,187	7,877	691 bp	+	44.9%
tRNA-Lys	Transfer RNA	7,878	7,951	74 bp	+	–
ATP8	Protein-coding gene	7,953	8,120	168 bp	+	48.2%
ATP6	Protein-coding gene	8,111	8,794	684 bp	+	45.5%
COX3	Protein-coding gene	8,794	9,578	785 bp	+	48.5%
tRNA-Gly	Transfer RNA	9,579	9,648	70 bp	+	–
ND3	Protein-coding gene	9,649	9,997	349 bp	+	50.1%
tRNA-Arg	Transfer RNA	9,998	10,067	70 bp	+	–
ND4L	Protein-coding gene	10,068	10,364	297 bp	+	52.5%
ND4	Protein-coding gene	10,358	11,738	1,381 bp	+	46.8%
tRNA-His	Transfer RNA	11,739	11,807	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,808	11,876	69 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,878	11,950	73 bp	+	–
ND5	Protein-coding gene	11,951	13,789	1,839 bp	+	45.0%
ND6	Protein-coding gene	13,786	14,307	522 bp	−	48.3%
tRNA-Glu	Transfer RNA	14,308	14,376	69 bp	−	–
CYTB	Protein-coding gene	14,380	15,520	1,141 bp	+	46.8%
tRNA-Thr	Transfer RNA	15,521	15,592	72 bp	+	–
tRNA-Pro	Transfer RNA	15,592	15,661	70 bp	−	–
D-loop	Control region	15,662	16,754	1,093 bp	–	40.0%