Protobothrops flavoviridis
Yellow-spotted pit viper
GC content
41.86%
Whole genome
Non-coding
2,132 bp
D-loop 2,068 bp
Where Yellow-spotted pit viper sits among 2,335 species
Whole-genome GC content against maximum lifespan. Yellow-spotted pit viper has the 657th longest lifespan of them.
- This species
- Other reptiles
- Other classes
Base composition
Whole genome17,232 bp
- GC skew (G − C) / (G + C)
- −0.399
- AT skew (A − T) / (A + T)
- +0.136
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in captivity
- Data quality
- acceptable, small sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome17,232 bp
Protein-coding11,287 bp
12S rRNA915 bp
16S rRNA1,481 bp
All tRNA1,427 bp
D-loop2,068 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 961 bp | 42.56% | −0.472 | +0.109 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,030 bp | 43.69% | −0.569 | +0.231 | |||||
| COX1Cytochrome c oxidase subunit I | 1,602 bp | 44.69% | −0.302 | +0.038 | |||||
| COX2Cytochrome c oxidase subunit II | 685 bp | 45.55% | −0.333 | +0.190 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 32.73% | −0.630 | +0.261 | |||||
| ATP6ATP synthase F0 subunit 6 | 681 bp | 43.61% | −0.515 | +0.120 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 45.66% | −0.346 | +0.117 | |||||
| ND3NADH dehydrogenase subunit 3 | 343 bp | 41.98% | −0.444 | +0.065 | |||||
| ND4LNADH dehydrogenase subunit 4L | 291 bp | 38.83% | −0.398 | +0.045 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,338 bp | 43.05% | −0.531 | +0.163 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,788 bp | 40.05% | −0.550 | +0.179 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 40.81% | −0.681 | +0.553 | |||||
| CYTBCytochrome b | 1,114 bp | 42.46% | −0.484 | +0.048 | |||||
| 12S rRNA12S ribosomal RNA | 915 bp | 42.84% | −0.199 | +0.289 | |||||
| 16S rRNA16S ribosomal RNA | 1,481 bp | 39.37% | −0.208 | +0.272 | |||||
| D-loopControl region (D-loop) | 2,068 bp | 39.31% | −0.373 | −0.087 |
Codon usage
Counts per codon, darker is more frequent3,766 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.5%
UUU92
UUC114
Leu L15.9%
UUA77
UUG14
CUU79
CUC111
CUA271
CUG45
Ile I8.7%
AUU108
AUC218
Met M6.4%
AUA206
AUG34
Val V4.4%
GUU39
GUC37
GUA69
GUG21
Ser S7.0%
UCU32
UCC79
UCA99
UCG3
AGU9
AGC41
Pro P5.5%
CCU35
CCC70
CCA99
CCG5
Thr T10.9%
ACU59
ACC171
ACA170
ACG12
Ala A6.5%
GCU26
GCC110
GCA100
GCG10
Tyr Y2.9%
UAU41
UAC69
His H2.7%
CAU15
CAC86
Gln Q2.4%
CAA81
CAG9
Asn N3.9%
AAU42
AAC106
Lys K2.7%
AAA91
AAG11
Asp D1.5%
GAU13
GAC43
Glu E2.7%
GAA81
GAG19
Cys C0.8%
UGU11
UGC19
Trp W2.6%
UGA91
UGG8
Arg R1.6%
CGU7
CGC12
CGA38
CGG4
Gly G5.2%
GGU24
GGC69
GGA76
GGG28
Stop 0.2%
UAA4
UAG0
AGA2
AGG1
Genome map
39 annotated features in NC_030181.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop2
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (41.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 39 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 64 | 64 bp | + | – |
| 12S rRNA | Ribosomal RNA | 65 | 979 | 915 bp | + | 42.8% |
| tRNA-Val | Transfer RNA | 980 | 1,043 | 64 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,044 | 2,524 | 1,481 bp | + | 39.4% |
| ND1 | Protein-coding gene | 2,525 | 3,485 | 961 bp | + | 42.6% |
| tRNA-Ile | Transfer RNA | 3,486 | 3,555 | 70 bp | + | – |
| tRNA-Pro | Transfer RNA | 3,560 | 3,622 | 63 bp | − | – |
| D-loop | Control region | 3,623 | 4,653 | 1,031 bp | – | 39.3% |
| tRNA-Leu (UUR) | Transfer RNA | 4,654 | 4,726 | 73 bp | + | – |
| tRNA-Gln | Transfer RNA | 4,727 | 4,796 | 70 bp | − | – |
| tRNA-Met | Transfer RNA | 4,797 | 4,858 | 62 bp | + | – |
| ND2 | Protein-coding gene | 4,859 | 5,888 | 1,030 bp | + | 43.7% |
| tRNA-Trp | Transfer RNA | 5,889 | 5,954 | 66 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,955 | 6,019 | 65 bp | − | – |
| tRNA-Asn | Transfer RNA | 6,020 | 6,092 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 6,127 | 6,185 | 59 bp | − | – |
| tRNA-Tyr | Transfer RNA | 6,186 | 6,247 | 62 bp | − | – |
| COX1 | Protein-coding gene | 6,249 | 7,850 | 1,602 bp | + | 44.7% |
| tRNA-Ser (UCN) | Transfer RNA | 7,841 | 7,908 | 68 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,909 | 7,971 | 63 bp | + | – |
| COX2 | Protein-coding gene | 7,972 | 8,656 | 685 bp | + | 45.6% |
| tRNA-Lys | Transfer RNA | 8,657 | 8,718 | 62 bp | + | – |
| ATP8 | Protein-coding gene | 8,719 | 8,883 | 165 bp | + | 32.7% |
| ATP6 | Protein-coding gene | 8,874 | 9,554 | 681 bp | + | 43.6% |
| COX3 | Protein-coding gene | 9,554 | 10,337 | 784 bp | + | 45.7% |
| tRNA-Gly | Transfer RNA | 10,338 | 10,397 | 60 bp | + | – |
| ND3 | Protein-coding gene | 10,398 | 10,740 | 343 bp | + | 42.0% |
| tRNA-Arg | Transfer RNA | 10,741 | 10,805 | 65 bp | + | – |
| ND4L | Protein-coding gene | 10,806 | 11,096 | 291 bp | + | 38.8% |
| ND4 | Protein-coding gene | 11,096 | 12,433 | 1,338 bp | + | 43.1% |
| tRNA-His | Transfer RNA | 12,435 | 12,496 | 62 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 12,497 | 12,551 | 55 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 12,552 | 12,623 | 72 bp | + | – |
| ND5 | Protein-coding gene | 12,625 | 14,412 | 1,788 bp | + | 40.1% |
| ND6 | Protein-coding gene | 14,408 | 14,929 | 522 bp | − | 40.8% |
| tRNA-Glu | Transfer RNA | 14,930 | 14,992 | 63 bp | − | – |
| CYTB | Protein-coding gene | 14,993 | 16,106 | 1,114 bp | + | 42.5% |
| tRNA-Thr | Transfer RNA | 16,107 | 16,172 | 66 bp | + | – |
| D-loop | Control region | 16,196 | 17,232 | 1,037 bp | – | 39.3% |