Psenopsis anomala
Pacific rudderfish
GC content
44.10%
Whole genome
Non-coding
874 bp
D-loop 799 bp
Where Pacific rudderfish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Pacific rudderfish has the 2,122nd longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,509 bp
- GC skew (G − C) / (G + C)
- −0.247
- AT skew (A − T) / (A + T)
- +0.018
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,509 bp
Protein-coding11,417 bp
12S rRNA959 bp
16S rRNA1,702 bp
All tRNA1,558 bp
D-loop799 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 45.85% | −0.414 | −0.034 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 46.85% | −0.343 | +0.007 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 44.68% | −0.169 | −0.112 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 41.53% | −0.268 | +0.010 | |||||
| ATP8ATP synthase F0 subunit 8 | 174 bp | 39.08% | −0.265 | +0.038 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 46.12% | −0.390 | −0.114 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 45.10% | −0.220 | −0.151 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 44.13% | −0.416 | −0.159 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 45.12% | −0.313 | −0.129 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,386 bp | 43.22% | −0.312 | −0.006 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 42.85% | −0.317 | +0.020 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 42.72% | −0.309 | +0.284 | |||||
| CYTBCytochrome b | 1,140 bp | 44.30% | −0.335 | −0.083 | |||||
| 12S rRNA12S ribosomal RNA | 959 bp | 46.40% | −0.025 | +0.140 | |||||
| 16S rRNA16S ribosomal RNA | 1,702 bp | 45.59% | −0.116 | +0.218 | |||||
| D-loopControl region (D-loop) | 799 bp | 37.80% | −0.166 | +0.038 |
Codon usage
Counts per codon, darker is more frequent3,810 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.2%
UUU109
UUC128
Leu L16.0%
UUA96
UUG17
CUU136
CUC114
CUA190
CUG56
Ile I7.6%
AUU180
AUC111
Met M5.0%
AUA142
AUG50
Val V6.1%
GUU66
GUC56
GUA85
GUG27
Ser S6.8%
UCU52
UCC76
UCA69
UCG10
AGU16
AGC36
Pro P5.6%
CCU53
CCC87
CCA62
CCG11
Thr T7.1%
ACU49
ACC102
ACA109
ACG11
Ala A8.6%
GCU79
GCC146
GCA93
GCG9
Tyr Y3.3%
UAU50
UAC75
His H2.7%
CAU36
CAC66
Gln Q2.4%
CAA78
CAG13
Asn N2.9%
AAU38
AAC71
Lys K2.4%
AAA79
AAG12
Asp D2.2%
GAU34
GAC48
Glu E2.7%
GAA80
GAG24
Cys C1.0%
UGU16
UGC22
Trp W2.8%
UGA85
UGG23
Arg R2.2%
CGU17
CGC14
CGA40
CGG11
Gly G6.2%
GGU48
GGC79
GGA65
GGG45
Stop 0.2%
UAA5
UAG2
AGA0
AGG1
Genome map
38 annotated features in NC_021460.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (44.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,028 | 959 bp | + | 46.4% |
| tRNA-Val | Transfer RNA | 1,029 | 1,098 | 70 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,099 | 2,800 | 1,702 bp | + | 45.6% |
| tRNA-Leu (UUR) | Transfer RNA | 2,801 | 2,874 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,875 | 3,849 | 975 bp | + | 45.9% |
| tRNA-Ile | Transfer RNA | 3,854 | 3,924 | 71 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,924 | 3,995 | 72 bp | − | – |
| tRNA-Met | Transfer RNA | 3,995 | 4,063 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,064 | 5,109 | 1,046 bp | + | 46.9% |
| tRNA-Trp | Transfer RNA | 5,110 | 5,180 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,182 | 5,250 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,252 | 5,324 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,360 | 5,426 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,427 | 5,496 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,498 | 7,048 | 1,551 bp | + | 44.7% |
| tRNA-Ser (UCN) | Transfer RNA | 7,049 | 7,120 | 72 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,124 | 7,192 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,215 | 7,905 | 691 bp | + | 41.5% |
| tRNA-Lys | Transfer RNA | 7,906 | 7,979 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,981 | 8,154 | 174 bp | + | 39.1% |
| ATP6 | Protein-coding gene | 8,145 | 8,827 | 683 bp | + | 46.1% |
| COX3 | Protein-coding gene | 8,828 | 9,612 | 785 bp | + | 45.1% |
| tRNA-Gly | Transfer RNA | 9,613 | 9,684 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,685 | 10,033 | 349 bp | + | 44.1% |
| tRNA-Arg | Transfer RNA | 10,034 | 10,103 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,104 | 10,400 | 297 bp | + | 45.1% |
| ND4 | Protein-coding gene | 10,394 | 11,779 | 1,386 bp | + | 43.2% |
| tRNA-His | Transfer RNA | 11,779 | 11,848 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,849 | 11,922 | 74 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,923 | 11,995 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,996 | 13,834 | 1,839 bp | + | 42.9% |
| ND6 | Protein-coding gene | 13,831 | 14,352 | 522 bp | − | 42.7% |
| tRNA-Glu | Transfer RNA | 14,353 | 14,421 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,426 | 15,565 | 1,140 bp | + | 44.3% |
| tRNA-Thr | Transfer RNA | 15,567 | 15,638 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,641 | 15,710 | 70 bp | − | – |
| D-loop | Control region | 15,711 | 16,509 | 799 bp | – | 37.8% |