Pseudaspius brandtii
Pacific redfin
GC content
45.57%
Whole genome
Non-coding
990 bp
D-loop 929 bp
Where Pacific redfin sits among 2,335 species
Whole-genome GC content against maximum lifespan. Pacific redfin has the 1,615th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,598 bp
- GC skew (G − C) / (G + C)
- −0.210
- AT skew (A − T) / (A + T)
- +0.046
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,598 bp
Protein-coding11,403 bp
12S rRNA957 bp
16S rRNA1,686 bp
All tRNA1,562 bp
D-loop929 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 48.10% | −0.228 | −0.079 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 48.61% | −0.299 | +0.017 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 44.29% | −0.162 | −0.081 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 43.27% | −0.171 | +0.020 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 39.39% | −0.385 | +0.160 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 44.59% | −0.298 | −0.029 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 47.19% | −0.222 | −0.024 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 47.56% | −0.289 | −0.049 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 46.13% | −0.328 | −0.013 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,382 bp | 44.86% | −0.268 | 0.000 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 45.53% | −0.325 | +0.022 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 47.32% | −0.401 | +0.491 | |||||
| CYTBCytochrome b | 1,141 bp | 45.14% | −0.282 | −0.026 | |||||
| 12S rRNA12S ribosomal RNA | 957 bp | 49.95% | −0.050 | +0.223 | |||||
| 16S rRNA16S ribosomal RNA | 1,686 bp | 46.15% | −0.049 | +0.242 | |||||
| D-loopControl region (D-loop) | 929 bp | 36.60% | −0.200 | −0.019 |
Codon usage
Counts per codon, darker is more frequent3,805 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.8%
UUU115
UUC107
Leu L16.6%
UUA97
UUG33
CUU134
CUC96
CUA196
CUG75
Ile I6.9%
AUU177
AUC87
Met M4.7%
AUA107
AUG71
Val V6.4%
GUU65
GUC51
GUA93
GUG36
Ser S6.4%
UCU44
UCC60
UCA66
UCG13
AGU14
AGC47
Pro P5.8%
CCU25
CCC91
CCA84
CCG19
Thr T8.1%
ACU50
ACC106
ACA125
ACG28
Ala A9.0%
GCU51
GCC146
GCA118
GCG28
Tyr Y2.9%
UAU56
UAC54
His H2.8%
CAU23
CAC84
Gln Q2.5%
CAA77
CAG20
Asn N2.8%
AAU49
AAC56
Lys K2.0%
AAA61
AAG17
Asp D2.1%
GAU23
GAC57
Glu E2.6%
GAA64
GAG35
Cys C0.7%
UGU13
UGC14
Trp W3.2%
UGA94
UGG26
Arg R2.0%
CGU11
CGC21
CGA30
CGG15
Gly G6.4%
GGU23
GGC78
GGA83
GGG59
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_018819.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,026 | 957 bp | + | 50.0% |
| tRNA-Val | Transfer RNA | 1,027 | 1,098 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,099 | 2,784 | 1,686 bp | + | 46.2% |
| tRNA-Leu (UUR) | Transfer RNA | 2,785 | 2,860 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,862 | 3,836 | 975 bp | + | 48.1% |
| tRNA-Ile | Transfer RNA | 3,840 | 3,911 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,910 | 3,980 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,982 | 4,050 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,051 | 5,095 | 1,045 bp | + | 48.6% |
| tRNA-Trp | Transfer RNA | 5,096 | 5,166 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,168 | 5,236 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,238 | 5,310 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,342 | 5,410 | 69 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,412 | 5,482 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,484 | 7,034 | 1,551 bp | + | 44.3% |
| tRNA-Ser (UCN) | Transfer RNA | 7,035 | 7,105 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,109 | 7,182 | 74 bp | + | – |
| COX2 | Protein-coding gene | 7,196 | 7,886 | 691 bp | + | 43.3% |
| tRNA-Lys | Transfer RNA | 7,887 | 7,962 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,964 | 8,128 | 165 bp | + | 39.4% |
| ATP6 | Protein-coding gene | 8,122 | 8,805 | 684 bp | + | 44.6% |
| COX3 | Protein-coding gene | 8,805 | 9,588 | 784 bp | + | 47.2% |
| tRNA-Gly | Transfer RNA | 9,589 | 9,659 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,660 | 10,008 | 349 bp | + | 47.6% |
| tRNA-Arg | Transfer RNA | 10,009 | 10,078 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,079 | 10,375 | 297 bp | + | 46.1% |
| ND4 | Protein-coding gene | 10,369 | 11,750 | 1,382 bp | + | 44.9% |
| tRNA-His | Transfer RNA | 11,751 | 11,819 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,820 | 11,888 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,890 | 11,962 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,963 | 13,798 | 1,836 bp | + | 45.5% |
| ND6 | Protein-coding gene | 13,795 | 14,316 | 522 bp | − | 47.3% |
| tRNA-Glu | Transfer RNA | 14,317 | 14,384 | 68 bp | − | – |
| CYTB | Protein-coding gene | 14,388 | 15,528 | 1,141 bp | + | 45.1% |
| tRNA-Thr | Transfer RNA | 15,529 | 15,600 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,600 | 15,669 | 70 bp | − | – |
| D-loop | Control region | 15,670 | 16,598 | 929 bp | – | 36.6% |