Pseudaspius hakonensis
Big-scaled redfin
GC content
45.53%
Whole genome
Non-coding
992 bp
D-loop 931 bp
Where Big-scaled redfin sits among 2,335 species
Whole-genome GC content against maximum lifespan. Big-scaled redfin has the 1,782nd longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,602 bp
- GC skew (G − C) / (G + C)
- −0.216
- AT skew (A − T) / (A + T)
- +0.052
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,602 bp
Protein-coding11,403 bp
12S rRNA957 bp
16S rRNA1,688 bp
All tRNA1,562 bp
D-loop931 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 46.56% | −0.273 | −0.040 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 48.33% | −0.307 | +0.030 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 46.16% | −0.168 | −0.073 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 44.43% | −0.166 | +0.031 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 41.21% | −0.382 | +0.155 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 44.44% | −0.316 | −0.016 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 46.68% | −0.208 | −0.038 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 46.42% | −0.309 | −0.027 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 45.46% | −0.274 | −0.025 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,382 bp | 45.73% | −0.269 | +0.003 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 44.94% | −0.360 | +0.041 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 48.85% | −0.349 | +0.461 | |||||
| CYTBCytochrome b | 1,141 bp | 43.38% | −0.289 | −0.034 | |||||
| 12S rRNA12S ribosomal RNA | 957 bp | 50.26% | −0.056 | +0.223 | |||||
| 16S rRNA16S ribosomal RNA | 1,688 bp | 45.91% | −0.048 | +0.244 | |||||
| D-loopControl region (D-loop) | 931 bp | 36.74% | −0.205 | −0.002 |
Codon usage
Counts per codon, darker is more frequent3,805 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.9%
UUU107
UUC118
Leu L16.6%
UUA92
UUG27
CUU112
CUC119
CUA220
CUG60
Ile I6.8%
AUU177
AUC82
Met M4.7%
AUA110
AUG69
Val V6.5%
GUU66
GUC50
GUA96
GUG36
Ser S6.4%
UCU48
UCC57
UCA63
UCG16
AGU11
AGC50
Pro P5.7%
CCU19
CCC92
CCA84
CCG22
Thr T8.0%
ACU54
ACC101
ACA132
ACG19
Ala A9.1%
GCU57
GCC152
GCA116
GCG21
Tyr Y2.9%
UAU53
UAC57
His H2.8%
CAU27
CAC79
Gln Q2.6%
CAA74
CAG24
Asn N2.8%
AAU46
AAC62
Lys K2.0%
AAA61
AAG16
Asp D2.1%
GAU22
GAC57
Glu E2.6%
GAA71
GAG28
Cys C0.7%
UGU12
UGC16
Trp W3.2%
UGA95
UGG25
Arg R2.0%
CGU11
CGC18
CGA33
CGG13
Gly G6.4%
GGU23
GGC70
GGA86
GGG64
Stop 0.2%
UAA5
UAG2
AGA0
AGG0
Genome map
38 annotated features in NC_018820.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,026 | 957 bp | + | 50.3% |
| tRNA-Val | Transfer RNA | 1,027 | 1,098 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,099 | 2,786 | 1,688 bp | + | 45.9% |
| tRNA-Leu (UUR) | Transfer RNA | 2,787 | 2,862 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,864 | 3,838 | 975 bp | + | 46.6% |
| tRNA-Ile | Transfer RNA | 3,842 | 3,913 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,912 | 3,982 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,984 | 4,052 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,053 | 5,097 | 1,045 bp | + | 48.3% |
| tRNA-Trp | Transfer RNA | 5,098 | 5,168 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,170 | 5,238 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,240 | 5,312 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,344 | 5,412 | 69 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,414 | 5,484 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,486 | 7,036 | 1,551 bp | + | 46.2% |
| tRNA-Ser (UCN) | Transfer RNA | 7,037 | 7,107 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,111 | 7,184 | 74 bp | + | – |
| COX2 | Protein-coding gene | 7,198 | 7,888 | 691 bp | + | 44.4% |
| tRNA-Lys | Transfer RNA | 7,889 | 7,964 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,966 | 8,130 | 165 bp | + | 41.2% |
| ATP6 | Protein-coding gene | 8,124 | 8,807 | 684 bp | + | 44.4% |
| COX3 | Protein-coding gene | 8,807 | 9,590 | 784 bp | + | 46.7% |
| tRNA-Gly | Transfer RNA | 9,591 | 9,661 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,662 | 10,010 | 349 bp | + | 46.4% |
| tRNA-Arg | Transfer RNA | 10,011 | 10,080 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,081 | 10,377 | 297 bp | + | 45.5% |
| ND4 | Protein-coding gene | 10,371 | 11,752 | 1,382 bp | + | 45.7% |
| tRNA-His | Transfer RNA | 11,753 | 11,821 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,822 | 11,890 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,892 | 11,964 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,965 | 13,800 | 1,836 bp | + | 44.9% |
| ND6 | Protein-coding gene | 13,797 | 14,318 | 522 bp | − | 48.9% |
| tRNA-Glu | Transfer RNA | 14,319 | 14,386 | 68 bp | − | – |
| CYTB | Protein-coding gene | 14,390 | 15,530 | 1,141 bp | + | 43.4% |
| tRNA-Thr | Transfer RNA | 15,531 | 15,602 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,602 | 15,671 | 70 bp | − | – |
| D-loop | Control region | 15,672 | 16,602 | 931 bp | – | 36.7% |