Pseudomys chapmani
Western pebble-mound mouse
GC content
36.04%
Whole genome
Non-coding
914 bp
Including the D-loop
Where Western pebble-mound mouse sits among 2,335 species
Whole-genome GC content against maximum lifespan. Western pebble-mound mouse has the 1,877th longest lifespan of them.
- This species
- Other mammals
- Other classes
Base composition
Whole genome16,249 bp
- GC skew (G − C) / (G + C)
- −0.341
- AT skew (A − T) / (A + T)
- +0.127
Life history
- Maximum lifespan
- 6.8 years
- Adult weight
- 12 g
Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 03076)
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in captivity
- Data quality
- acceptable, small sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,249 bp
Protein-coding11,328 bp
12S rRNA953 bp
16S rRNA1,564 bp
All tRNA1,493 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 955 bp | 36.55% | −0.415 | +0.079 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,036 bp | 33.49% | −0.597 | +0.187 | |||||
| COX1Cytochrome c oxidase subunit I | 1,545 bp | 39.48% | −0.220 | +0.016 | |||||
| COX2Cytochrome c oxidase subunit II | 684 bp | 36.26% | −0.290 | +0.106 | |||||
| ATP8ATP synthase F0 subunit 8 | 192 bp | 30.21% | −0.655 | +0.179 | |||||
| ATP6ATP synthase F0 subunit 6 | 681 bp | 35.10% | −0.423 | +0.032 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 38.27% | −0.280 | +0.017 | |||||
| ND3NADH dehydrogenase subunit 3 | 348 bp | 35.35% | −0.398 | +0.058 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 37.71% | −0.482 | −0.005 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,375 bp | 35.27% | −0.456 | +0.115 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,821 bp | 35.91% | −0.486 | +0.112 | |||||
| ND6NADH dehydrogenase subunit 6 | 519 bp | 37.38% | −0.660 | +0.458 | |||||
| CYTBCytochrome b | 1,144 bp | 37.76% | −0.375 | +0.079 | |||||
| 12S rRNA12S ribosomal RNA | 953 bp | 37.04% | −0.116 | +0.233 | |||||
| 16S rRNA16S ribosomal RNA | 1,564 bp | 35.25% | −0.100 | +0.221 |
Codon usage
Counts per codon, darker is more frequent3,792 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.9%
UUU124
UUC100
Leu L15.7%
UUA142
UUG23
CUU95
CUC47
CUA274
CUG14
Ile I9.6%
AUU180
AUC184
Met M6.3%
AUA213
AUG27
Val V4.4%
GUU45
GUC20
GUA89
GUG11
Ser S7.7%
UCU44
UCC50
UCA148
UCG1
AGU25
AGC25
Pro P5.1%
CCU34
CCC18
CCA135
CCG5
Thr T8.8%
ACU67
ACC82
ACA185
ACG1
Ala A5.7%
GCU47
GCC82
GCA84
GCG2
Tyr Y3.4%
UAU66
UAC62
His H2.7%
CAU35
CAC66
Gln Q2.3%
CAA83
CAG3
Asn N4.6%
AAU62
AAC112
Lys K2.7%
AAA100
AAG1
Asp D1.9%
GAU33
GAC38
Glu E2.4%
GAA83
GAG9
Cys C0.8%
UGU12
UGC17
Trp W2.7%
UGA93
UGG11
Arg R1.7%
CGU8
CGC6
CGA49
CGG1
Gly G5.6%
GGU26
GGC37
GGA123
GGG25
Stop 0.2%
UAA7
UAG1
AGA0
AGG0
Genome map
37 annotated features in NC_014698.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (36.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,022 | 953 bp | + | 37.0% |
| tRNA-Val | Transfer RNA | 1,023 | 1,089 | 67 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,090 | 2,653 | 1,564 bp | + | 35.3% |
| tRNA-Leu (UUR) | Transfer RNA | 2,654 | 2,728 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,729 | 3,683 | 955 bp | + | 36.6% |
| tRNA-Ile | Transfer RNA | 3,684 | 3,752 | 69 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,750 | 3,820 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,822 | 3,890 | 69 bp | + | – |
| ND2 | Protein-coding gene | 3,891 | 4,926 | 1,036 bp | + | 33.5% |
| tRNA-Trp | Transfer RNA | 4,927 | 4,991 | 65 bp | + | – |
| tRNA-Ala | Transfer RNA | 4,993 | 5,061 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,064 | 5,133 | 70 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,166 | 5,232 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,235 | 5,300 | 66 bp | − | – |
| COX1 | Protein-coding gene | 5,302 | 6,846 | 1,545 bp | + | 39.5% |
| tRNA-Ser (UCN) | Transfer RNA | 6,844 | 6,912 | 69 bp | − | – |
| tRNA-Asp | Transfer RNA | 6,916 | 6,983 | 68 bp | + | – |
| COX2 | Protein-coding gene | 6,985 | 7,668 | 684 bp | + | 36.3% |
| tRNA-Lys | Transfer RNA | 7,672 | 7,735 | 64 bp | + | – |
| ATP8 | Protein-coding gene | 7,737 | 7,928 | 192 bp | + | 30.2% |
| ATP6 | Protein-coding gene | 7,898 | 8,578 | 681 bp | + | 35.1% |
| COX3 | Protein-coding gene | 8,578 | 9,361 | 784 bp | + | 38.3% |
| tRNA-Gly | Transfer RNA | 9,362 | 9,429 | 68 bp | + | – |
| ND3 | Protein-coding gene | 9,430 | 9,777 | 348 bp | + | 35.4% |
| tRNA-Arg | Transfer RNA | 9,779 | 9,846 | 68 bp | + | – |
| ND4L | Protein-coding gene | 9,849 | 10,145 | 297 bp | + | 37.7% |
| ND4 | Protein-coding gene | 10,139 | 11,513 | 1,375 bp | + | 35.3% |
| tRNA-His | Transfer RNA | 11,514 | 11,581 | 68 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,582 | 11,641 | 60 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,641 | 11,712 | 72 bp | + | – |
| ND5 | Protein-coding gene | 11,713 | 13,533 | 1,821 bp | + | 35.9% |
| ND6 | Protein-coding gene | 13,520 | 14,038 | 519 bp | − | 37.4% |
| tRNA-Glu | Transfer RNA | 14,039 | 14,107 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,113 | 15,256 | 1,144 bp | + | 37.8% |
| tRNA-Thr | Transfer RNA | 15,257 | 15,324 | 68 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,325 | 15,390 | 66 bp | + | – |