Pseudotolithus elongatus
Bobo croaker
GC content
46.91%
Whole genome
Non-coding
896 bp
D-loop 827 bp
Where Bobo croaker sits among 2,335 species
Whole-genome GC content against maximum lifespan. Bobo croaker has the 2,049th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,497 bp
- GC skew (G − C) / (G + C)
- −0.314
- AT skew (A − T) / (A + T)
- +0.046
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,497 bp
Protein-coding11,413 bp
12S rRNA948 bp
16S rRNA1,698 bp
All tRNA1,547 bp
D-loop827 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 48.21% | −0.404 | −0.050 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 49.04% | −0.493 | +0.021 | |||||
| COX1Cytochrome c oxidase subunit I | 1,557 bp | 47.46% | −0.218 | −0.083 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 45.15% | −0.301 | +0.034 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 40.48% | −0.500 | +0.220 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 48.54% | −0.452 | −0.051 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 48.79% | −0.326 | −0.070 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 49.28% | −0.372 | −0.209 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 53.54% | −0.409 | −0.130 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 48.23% | −0.405 | −0.001 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 46.28% | −0.450 | +0.028 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 46.17% | −0.469 | +0.431 | |||||
| CYTBCytochrome b | 1,141 bp | 48.20% | −0.389 | −0.056 | |||||
| 12S rRNA12S ribosomal RNA | 948 bp | 47.68% | −0.097 | +0.198 | |||||
| 16S rRNA16S ribosomal RNA | 1,698 bp | 47.17% | −0.151 | +0.233 | |||||
| D-loopControl region (D-loop) | 827 bp | 36.03% | −0.161 | +0.062 |
Codon usage
Counts per codon, darker is more frequent3,809 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.3%
UUU109
UUC130
Leu L17.9%
UUA69
UUG20
CUU145
CUC213
CUA191
CUG45
Ile I6.9%
AUU146
AUC118
Met M3.9%
AUA83
AUG65
Val V5.6%
GUU47
GUC78
GUA68
GUG20
Ser S6.1%
UCU41
UCC76
UCA63
UCG3
AGU7
AGC43
Pro P5.8%
CCU46
CCC106
CCA54
CCG15
Thr T8.1%
ACU52
ACC136
ACA112
ACG9
Ala A8.9%
GCU53
GCC180
GCA99
GCG8
Tyr Y2.9%
UAU41
UAC68
His H2.9%
CAU21
CAC88
Gln Q2.5%
CAA82
CAG15
Asn N3.1%
AAU28
AAC91
Lys K1.9%
AAA67
AAG7
Asp D2.0%
GAU21
GAC55
Glu E2.7%
GAA81
GAG21
Cys C0.7%
UGU7
UGC18
Trp W3.2%
UGA101
UGG19
Arg R2.0%
CGU7
CGC14
CGA48
CGG8
Gly G6.4%
GGU32
GGC108
GGA69
GGG35
Stop 0.2%
UAA5
UAG1
AGA1
AGG0
Genome map
38 annotated features in NC_044717.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (46.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,016 | 948 bp | + | 47.7% |
| tRNA-Val | Transfer RNA | 1,018 | 1,089 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,091 | 2,788 | 1,698 bp | + | 47.2% |
| tRNA-Leu (UUR) | Transfer RNA | 2,789 | 2,862 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,863 | 3,837 | 975 bp | + | 48.2% |
| tRNA-Ile | Transfer RNA | 3,842 | 3,911 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,911 | 3,981 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,981 | 4,049 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,050 | 5,095 | 1,046 bp | + | 49.0% |
| tRNA-Trp | Transfer RNA | 5,096 | 5,166 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,168 | 5,236 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,239 | 5,311 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,349 | 5,415 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,416 | 5,485 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,487 | 7,043 | 1,557 bp | + | 47.5% |
| tRNA-Ser (UCN) | Transfer RNA | 7,039 | 7,109 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,113 | 7,181 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,190 | 7,880 | 691 bp | + | 45.2% |
| tRNA-Lys | Transfer RNA | 7,881 | 7,954 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,956 | 8,123 | 168 bp | + | 40.5% |
| ATP6 | Protein-coding gene | 8,114 | 8,797 | 684 bp | + | 48.5% |
| COX3 | Protein-coding gene | 8,797 | 9,581 | 785 bp | + | 48.8% |
| tRNA-Gly | Transfer RNA | 9,582 | 9,652 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,653 | 10,001 | 349 bp | + | 49.3% |
| tRNA-Arg | Transfer RNA | 10,002 | 10,070 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,071 | 10,367 | 297 bp | + | 53.5% |
| ND4 | Protein-coding gene | 10,361 | 11,741 | 1,381 bp | + | 48.2% |
| tRNA-His | Transfer RNA | 11,742 | 11,810 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,811 | 11,878 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,883 | 11,955 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,956 | 13,794 | 1,839 bp | + | 46.3% |
| ND6 | Protein-coding gene | 13,791 | 14,312 | 522 bp | − | 46.2% |
| tRNA-Glu | Transfer RNA | 14,313 | 14,381 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,386 | 15,526 | 1,141 bp | + | 48.2% |
| tRNA-Thr | Transfer RNA | 15,527 | 15,598 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,601 | 15,670 | 70 bp | − | – |
| D-loop | Control region | 15,671 | 16,497 | 827 bp | – | 36.0% |