Pterapogon kauderni
Banggai cardinal fish
GC content
44.25%
Whole genome
Non-coding
934 bp
D-loop 861 bp
Where Banggai cardinal fish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Banggai cardinal fish has the 2,027th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,530 bp
- GC skew (G − C) / (G + C)
- −0.291
- AT skew (A − T) / (A + T)
- +0.019
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an estimate, not an observed animal
- Data quality
- low
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,530 bp
Protein-coding11,407 bp
12S rRNA959 bp
16S rRNA1,683 bp
All tRNA1,547 bp
D-loop861 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 45.33% | −0.339 | −0.062 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,047 bp | 48.04% | −0.511 | −0.018 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 44.23% | −0.207 | −0.108 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 42.26% | −0.226 | +0.013 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 46.43% | −0.615 | +0.067 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 43.19% | −0.403 | −0.134 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 43.57% | −0.275 | −0.065 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 44.13% | −0.455 | −0.169 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 47.48% | −0.390 | −0.077 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 43.66% | −0.406 | −0.067 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 41.38% | −0.430 | −0.006 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 42.91% | −0.366 | +0.403 | |||||
| CYTBCytochrome b | 1,141 bp | 45.49% | −0.387 | −0.084 | |||||
| 12S rRNA12S ribosomal RNA | 959 bp | 48.91% | −0.117 | +0.216 | |||||
| 16S rRNA16S ribosomal RNA | 1,683 bp | 44.92% | −0.122 | +0.234 | |||||
| D-loopControl region (D-loop) | 861 bp | 37.98% | −0.125 | 0.000 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.4%
UUU133
UUC112
Leu L17.4%
UUA99
UUG21
CUU191
CUC163
CUA158
CUG32
Ile I7.5%
AUU191
AUC94
Met M4.0%
AUA111
AUG41
Val V5.5%
GUU68
GUC44
GUA82
GUG17
Ser S6.0%
UCU54
UCC70
UCA50
UCG3
AGU18
AGC34
Pro P6.0%
CCU63
CCC102
CCA58
CCG6
Thr T8.0%
ACU68
ACC123
ACA107
ACG8
Ala A9.0%
GCU63
GCC160
GCA112
GCG9
Tyr Y3.0%
UAU58
UAC55
His H2.8%
CAU33
CAC72
Gln Q2.5%
CAA89
CAG7
Asn N3.2%
AAU52
AAC69
Lys K2.0%
AAA71
AAG7
Asp D1.8%
GAU24
GAC46
Glu E2.6%
GAA87
GAG13
Cys C0.6%
UGU11
UGC13
Trp W3.1%
UGA99
UGG18
Arg R2.0%
CGU10
CGC14
CGA49
CGG5
Gly G6.1%
GGU33
GGC87
GGA89
GGG24
Stop 0.2%
UAA6
UAG0
AGA1
AGG0
Genome map
38 annotated features in NC_022511.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (44.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,027 | 959 bp | + | 48.9% |
| tRNA-Val | Transfer RNA | 1,028 | 1,099 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,100 | 2,782 | 1,683 bp | + | 44.9% |
| tRNA-Leu (UUR) | Transfer RNA | 2,783 | 2,856 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,857 | 3,831 | 975 bp | + | 45.3% |
| tRNA-Ile | Transfer RNA | 3,834 | 3,903 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,903 | 3,973 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,973 | 4,041 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,042 | 5,088 | 1,047 bp | + | 48.0% |
| tRNA-Trp | Transfer RNA | 5,093 | 5,165 | 73 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,170 | 5,238 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,240 | 5,312 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,350 | 5,414 | 65 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,415 | 5,484 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,486 | 7,036 | 1,551 bp | + | 44.2% |
| tRNA-Ser (UCN) | Transfer RNA | 7,037 | 7,107 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,108 | 7,179 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,186 | 7,876 | 691 bp | + | 42.3% |
| tRNA-Lys | Transfer RNA | 7,877 | 7,949 | 73 bp | + | – |
| ATP8 | Protein-coding gene | 7,951 | 8,118 | 168 bp | + | 46.4% |
| ATP6 | Protein-coding gene | 8,109 | 8,791 | 683 bp | + | 43.2% |
| COX3 | Protein-coding gene | 8,792 | 9,576 | 785 bp | + | 43.6% |
| tRNA-Gly | Transfer RNA | 9,577 | 9,645 | 69 bp | + | – |
| ND3 | Protein-coding gene | 9,647 | 9,995 | 349 bp | + | 44.1% |
| tRNA-Arg | Transfer RNA | 9,996 | 10,064 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,065 | 10,361 | 297 bp | + | 47.5% |
| ND4 | Protein-coding gene | 10,355 | 11,735 | 1,381 bp | + | 43.7% |
| tRNA-His | Transfer RNA | 11,736 | 11,804 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,805 | 11,872 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,882 | 11,954 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,955 | 13,793 | 1,839 bp | + | 41.4% |
| ND6 | Protein-coding gene | 13,789 | 14,310 | 522 bp | − | 42.9% |
| tRNA-Glu | Transfer RNA | 14,311 | 14,379 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,386 | 15,526 | 1,141 bp | + | 45.5% |
| tRNA-Thr | Transfer RNA | 15,527 | 15,597 | 71 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,599 | 15,669 | 71 bp | − | – |
| D-loop | Control region | 15,670 | 16,530 | 861 bp | – | 38.0% |