Pteropus dasymallus

Ryukyu flying fox

Maximum lifespan

24 yr

AnAge record

mtDNA size

16,705 bp

RefSeq NC_002612.1

GC content

41.63%

Whole genome

Non-coding

1,302 bp

D-loop 1,250 bp

Where Ryukyu flying fox sits among 2,335 species

Whole-genome GC content against maximum lifespan. Ryukyu flying fox has the 688th longest lifespan of them.

This species
Other mammals
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,705 bp

GC skew (G − C) / (G + C): −0.306
AT skew (A − T) / (A + T): +0.134

Life history

Maximum lifespan: 24 years
Adult weight: 435 g
Litter or clutch size: 1

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02361)

About this record

Lifespan source: AnAge build 15
Based on: an animal in captivity
Data quality: acceptable, small sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,705 bp

Protein-coding11,354 bp

12S rRNA965 bp

16S rRNA1,572 bp

All tRNA1,522 bp

D-loop1,250 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Pteropus dasymallus genes

ND1NADH dehydrogenase subunit 1	957 bp	30.8%	25.0%	13.6%	30.6%	44.20%	−0.385	+0.105
ND2NADH dehydrogenase subunit 2	1,044 bp	35.6%	24.4%	10.5%	29.4%	39.94%	−0.472	+0.187
COX1Cytochrome c oxidase subunit I	1,545 bp	26.9%	28.7%	18.3%	26.0%	44.34%	−0.174	−0.033
COX2Cytochrome c oxidase subunit II	684 bp	31.3%	24.6%	15.6%	28.5%	44.15%	−0.291	+0.120
ATP8ATP synthase F0 subunit 8	204 bp	40.2%	26.5%	6.4%	27.0%	33.33%	−0.618	+0.206
ATP6ATP synthase F0 subunit 6	681 bp	32.5%	26.3%	12.3%	28.9%	41.26%	−0.402	+0.105
COX3Cytochrome c oxidase subunit III	785 bp	27.9%	27.0%	15.9%	29.2%	45.10%	−0.294	+0.016
ND3NADH dehydrogenase subunit 3	348 bp	31.9%	25.0%	12.6%	30.5%	43.10%	−0.413	+0.121
ND4LNADH dehydrogenase subunit 4L	297 bp	31.6%	29.3%	12.5%	26.6%	39.06%	−0.362	+0.039
ND4NADH dehydrogenase subunit 4	1,378 bp	32.9%	26.1%	11.8%	29.2%	41.00%	−0.427	+0.114
ND5NADH dehydrogenase subunit 5	1,818 bp	34.0%	26.6%	11.4%	27.9%	39.38%	−0.419	+0.122
ND6NADH dehydrogenase subunit 6	528 bp	43.2%	17.6%	7.8%	31.4%	39.21%	−0.604	+0.421
CYTBCytochrome b	1,140 bp	29.9%	26.0%	13.4%	30.7%	44.12%	−0.392	+0.071
12S rRNA12S ribosomal RNA	965 bp	36.2%	21.8%	19.1%	23.0%	42.07%	−0.094	+0.249
16S rRNA16S ribosomal RNA	1,572 bp	37.6%	22.3%	18.2%	21.9%	40.14%	−0.094	+0.256
D-loopControl region (D-loop)	1,250 bp	31.5%	23.5%	16.2%	28.8%	44.96%	−0.281	+0.145

Codon usage

Counts per codon, darker is more frequent

Gene

3,802 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.9%

UUU83

UUC140

Leu L16.0%

UUA81

UUG21

CUU57

CUC83

CUA293

CUG75

Ile I8.1%

AUU145

AUC164

Met M6.6%

AUA185

AUG66

Val V5.3%

GUU38

GUC39

GUA103

GUG21

Ser S7.7%

UCU42

UCC76

UCA104

UCG14

AGU11

AGC46

Pro P5.1%

CCU22

CCC55

CCA107

CCG10

Thr T8.1%

ACU45

ACC98

ACA147

ACG19

Ala A6.6%

GCU32

GCC115

GCA87

GCG18

Tyr Y3.7%

UAU61

UAC79

His H2.5%

CAU23

CAC71

Gln Q2.4%

CAA80

CAG11

Asn N4.1%

AAU39

AAC118

Lys K2.5%

AAA88

AAG8

Asp D1.8%

GAU18

GAC50

Glu E2.6%

GAA76

GAG21

Cys C0.6%

UGU6

UGC16

Trp W2.7%

UGA96

UGG8

Arg R1.7%

CGU6

CGC12

CGA45

CGG1

Gly G5.7%

GGU32

GGC61

GGA94

GGG29

Stop 0.3%

UAA9

UAG1

AGA0

AGG1

Genome map

38 annotated features in NC_002612.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (41.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Pteropus dasymallus (NC_002612.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	69	69 bp	+	–
12S rRNA	Ribosomal RNA	70	1,034	965 bp	+	42.1%
tRNA-Val	Transfer RNA	1,035	1,102	68 bp	+	–
16S rRNA	Ribosomal RNA	1,103	2,674	1,572 bp	+	40.1%
tRNA-Leu (UUR)	Transfer RNA	2,676	2,750	75 bp	+	–
ND1	Protein-coding gene	2,753	3,709	957 bp	+	44.2%
tRNA-Ile	Transfer RNA	3,709	3,777	69 bp	+	–
tRNA-Gln	Transfer RNA	3,775	3,847	73 bp	−	–
tRNA-Met	Transfer RNA	3,848	3,916	69 bp	+	–
ND2	Protein-coding gene	3,917	4,960	1,044 bp	+	39.9%
tRNA-Trp	Transfer RNA	4,959	5,027	69 bp	+	–
tRNA-Ala	Transfer RNA	5,032	5,100	69 bp	−	–
tRNA-Asn	Transfer RNA	5,101	5,174	74 bp	−	–
tRNA-Cys	Transfer RNA	5,209	5,279	71 bp	−	–
tRNA-Tyr	Transfer RNA	5,280	5,345	66 bp	−	–
COX1	Protein-coding gene	5,347	6,891	1,545 bp	+	44.3%
tRNA-Ser (UCN)	Transfer RNA	6,887	6,960	74 bp	−	–
tRNA-Asp	Transfer RNA	6,964	7,032	69 bp	+	–
COX2	Protein-coding gene	7,033	7,716	684 bp	+	44.2%
tRNA-Lys	Transfer RNA	7,720	7,790	71 bp	+	–
ATP8	Protein-coding gene	7,792	7,995	204 bp	+	33.3%
ATP6	Protein-coding gene	7,953	8,633	681 bp	+	41.3%
COX3	Protein-coding gene	8,633	9,417	785 bp	+	45.1%
tRNA-Gly	Transfer RNA	9,417	9,484	68 bp	+	–
ND3	Protein-coding gene	9,485	9,832	348 bp	+	43.1%
tRNA-Arg	Transfer RNA	9,835	9,900	66 bp	+	–
ND4L	Protein-coding gene	9,902	10,198	297 bp	+	39.1%
ND4	Protein-coding gene	10,192	11,569	1,378 bp	+	41.0%
tRNA-His	Transfer RNA	11,570	11,637	68 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,638	11,696	59 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,697	11,766	70 bp	+	–
ND5	Protein-coding gene	11,767	13,584	1,818 bp	+	39.4%
ND6	Protein-coding gene	13,581	14,108	528 bp	−	39.2%
tRNA-Glu	Transfer RNA	14,109	14,181	73 bp	−	–
CYTB	Protein-coding gene	14,182	15,321	1,140 bp	+	44.1%
tRNA-Thr	Transfer RNA	15,321	15,390	70 bp	+	–
tRNA-Pro	Transfer RNA	15,390	15,455	66 bp	−	–
D-loop	Control region	15,456	16,705	1,250 bp	–	45.0%