MitoAge

Pteropus scapulatus

Little red flying fox

Add to compare Download FASTA
Maximum lifespan
15.8 yr
AnAge record
mtDNA size
16,741 bp
RefSeq NC_002619.1
GC content
41.29%
Whole genome
Non-coding
1,344 bp
D-loop 1,286 bp

Where Little red flying fox sits among 2,335 species

Whole-genome GC content against maximum lifespan. Little red flying fox has the 1,184th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Little red flying fox
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,741 bp
GC skew (G − C) / (G + C)
−0.305
AT skew (A − T) / (A + T)
+0.138

Life history

Maximum lifespan
15.8 years
Adult weight
300 g
Basal metabolic rate
1.353 W
Body temperature
37 °C
Female sexual maturity
540 days
Male sexual maturity
540 days
Litter or clutch size
1
Litters per year
1

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02371)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, small sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,741 bp
Protein-coding11,354 bp
12S rRNA968 bp
16S rRNA1,572 bp
All tRNA1,512 bp
D-loop1,286 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1957 bp31.0%25.1%13.7%30.2%43.89%−0.376+0.106
ND2NADH dehydrogenase subunit 21,044 bp36.7%25.2%10.0%28.2%38.12%−0.477+0.186
COX1Cytochrome c oxidase subunit I1,545 bp28.0%28.5%17.0%26.4%43.43%−0.216−0.009
COX2Cytochrome c oxidase subunit II684 bp33.3%24.9%13.7%28.1%41.81%−0.343+0.146
ATP8ATP synthase F0 subunit 8204 bp40.7%26.0%5.9%27.5%33.33%−0.647+0.221
ATP6ATP synthase F0 subunit 6681 bp31.7%27.5%12.6%28.2%40.82%−0.381+0.072
COX3Cytochrome c oxidase subunit III785 bp27.5%27.4%15.8%29.3%45.10%−0.299+0.002
ND3NADH dehydrogenase subunit 3348 bp31.6%28.4%12.4%27.6%39.94%−0.381+0.053
ND4LNADH dehydrogenase subunit 4L297 bp32.0%28.6%12.5%26.9%39.39%−0.368+0.056
ND4NADH dehydrogenase subunit 41,378 bp32.9%26.7%11.9%28.4%40.35%−0.410+0.105
ND5NADH dehydrogenase subunit 51,818 bp33.9%26.2%11.9%28.1%39.93%−0.405+0.128
ND6NADH dehydrogenase subunit 6528 bp41.9%17.4%8.5%32.2%40.72%−0.581+0.412
CYTBCytochrome b1,140 bp30.6%25.4%13.5%30.5%44.04%−0.386+0.094
12S rRNA12S ribosomal RNA968 bp36.7%21.2%18.7%23.5%42.15%−0.113+0.268
16S rRNA16S ribosomal RNA1,572 bp37.6%22.5%18.6%21.3%39.95%−0.067+0.252
D-loopControl region (D-loop)1,286 bp31.9%22.9%16.6%28.5%45.14%−0.262+0.163

Codon usage

Counts per codon, darker is more frequent

3,802 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.9%
UUU74
UUC151
Leu L15.9%
UUA88
UUG12
CUU52
CUC82
CUA303
CUG68
Ile I8.2%
AUU148
AUC164
Met M6.5%
AUA181
AUG67
Val V5.4%
GUU37
GUC41
GUA109
GUG18
Ser S7.7%
UCU41
UCC72
UCA108
UCG10
AGU18
AGC44
Pro P5.2%
CCU29
CCC44
CCA116
CCG8
Thr T8.1%
ACU47
ACC89
ACA159
ACG14
Ala A6.7%
GCU35
GCC115
GCA91
GCG14
Tyr Y3.6%
UAU70
UAC67
His H2.5%
CAU27
CAC69
Gln Q2.4%
CAA83
CAG9
Asn N4.0%
AAU45
AAC108
Lys K2.6%
AAA91
AAG7
Asp D1.7%
GAU17
GAC48
Glu E2.5%
GAA78
GAG17
Cys C0.6%
UGU4
UGC18
Trp W2.7%
UGA97
UGG7
Arg R1.7%
CGU6
CGC14
CGA40
CGG4
Gly G5.7%
GGU31
GGC60
GGA90
GGG35
Stop 0.3%
UAA8
UAG2
AGA0
AGG1

Genome map

38 annotated features in NC_002619.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (41.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA17070 bp+–
12S rRNARibosomal RNA711,038968 bp+42.2%
tRNA-ValTransfer RNA1,0381,10669 bp+–
16S rRNARibosomal RNA1,1072,6781,572 bp+40.0%
tRNA-Leu (UUR)Transfer RNA2,6792,75375 bp+–
ND1Protein-coding gene2,7563,712957 bp+43.9%
tRNA-IleTransfer RNA3,7123,78069 bp+–
tRNA-GlnTransfer RNA3,7783,85073 bp−–
tRNA-MetTransfer RNA3,8513,91969 bp+–
ND2Protein-coding gene3,9204,9631,044 bp+38.1%
tRNA-TrpTransfer RNA4,9625,03069 bp+–
tRNA-AlaTransfer RNA5,0355,10369 bp−–
tRNA-AsnTransfer RNA5,1055,17773 bp−–
tRNA-CysTransfer RNA5,2125,28069 bp−–
tRNA-TyrTransfer RNA5,2825,34766 bp−–
COX1Protein-coding gene5,3496,8931,545 bp+43.4%
tRNA-Ser (UCN)Transfer RNA6,8916,95969 bp−–
tRNA-AspTransfer RNA6,9657,03268 bp+–
COX2Protein-coding gene7,0347,717684 bp+41.8%
tRNA-LysTransfer RNA7,7217,79171 bp+–
ATP8Protein-coding gene7,7937,996204 bp+33.3%
ATP6Protein-coding gene7,9548,634681 bp+40.8%
COX3Protein-coding gene8,6349,418785 bp+45.1%
tRNA-GlyTransfer RNA9,4189,48669 bp+–
ND3Protein-coding gene9,4879,834348 bp+39.9%
tRNA-ArgTransfer RNA9,8369,90368 bp+–
ND4LProtein-coding gene9,90410,200297 bp+39.4%
ND4Protein-coding gene10,19411,5711,378 bp+40.4%
tRNA-HisTransfer RNA11,57211,63968 bp+–
tRNA-Ser (AGY)Transfer RNA11,64011,69758 bp+–
tRNA-Leu (CUN)Transfer RNA11,69811,76669 bp+–
ND5Protein-coding gene11,76713,5841,818 bp+39.9%
ND6Protein-coding gene13,58114,108528 bp−40.7%
tRNA-GluTransfer RNA14,10914,17769 bp−–
CYTBProtein-coding gene14,18215,3211,140 bp+44.0%
tRNA-ThrTransfer RNA15,32115,38969 bp+–
tRNA-ProTransfer RNA15,38915,45567 bp−–
D-loopControl region15,45616,7411,286 bp–45.1%

Downloads