MitoAge

Pteropus vampyrus

Large flying fox

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Maximum lifespan
20.9 yr
AnAge record
mtDNA size
16,554 bp
RefSeq NC_026542.1
GC content
41.53%
Whole genome
Non-coding
1,164 bp
D-loop 1,104 bp

Where Large flying fox sits among 2,335 species

Whole-genome GC content against maximum lifespan. Large flying fox has the 858th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Large flying fox
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,554 bp
GC skew (G − C) / (G + C)
−0.305
AT skew (A − T) / (A + T)
+0.131

Life history

Maximum lifespan
20.9 years
Adult weight
872 g
Basal metabolic rate
4.486 W
Body temperature
36.9 °C
Litter or clutch size
1
Litters per year
1

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02372)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)
  • A match to a lifespan source is under review and was not used.

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,554 bp
Protein-coding11,350 bp
12S rRNA964 bp
16S rRNA1,570 bp
All tRNA1,510 bp
D-loop1,104 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1956 bp30.9%25.5%13.5%30.1%43.62%−0.381+0.095
ND2NADH dehydrogenase subunit 21,042 bp35.1%23.8%11.0%30.0%41.08%−0.463+0.192
COX1Cytochrome c oxidase subunit I1,545 bp27.5%28.9%17.7%25.9%43.63%−0.187−0.024
COX2Cytochrome c oxidase subunit II684 bp31.6%25.3%14.8%28.4%43.13%−0.315+0.111
ATP8ATP synthase F0 subunit 8204 bp40.7%25.0%5.9%28.4%34.31%−0.657+0.239
ATP6ATP synthase F0 subunit 6681 bp32.9%26.3%11.7%29.1%40.82%−0.424+0.112
COX3Cytochrome c oxidase subunit III784 bp27.0%27.0%16.6%29.3%45.92%−0.2780.000
ND3NADH dehydrogenase subunit 3348 bp32.5%25.6%11.8%30.2%41.95%−0.438+0.119
ND4LNADH dehydrogenase subunit 4L297 bp30.3%31.0%13.1%25.6%38.72%−0.322−0.011
ND4NADH dehydrogenase subunit 41,378 bp32.9%25.9%11.8%29.4%41.22%−0.426+0.119
ND5NADH dehydrogenase subunit 51,818 bp33.9%26.6%11.7%27.7%39.44%−0.406+0.121
ND6NADH dehydrogenase subunit 6528 bp41.9%18.4%9.1%30.7%39.77%−0.543+0.390
CYTBCytochrome b1,140 bp29.6%25.7%13.6%31.1%44.74%−0.392+0.070
12S rRNA12S ribosomal RNA964 bp35.6%21.6%19.8%23.0%42.84%−0.075+0.245
16S rRNA16S ribosomal RNA1,570 bp37.7%22.3%18.2%21.8%40.00%−0.092+0.257
D-loopControl region (D-loop)1,104 bp31.6%25.0%15.5%27.9%43.39%−0.286+0.117

Codon usage

Counts per codon, darker is more frequent

3,800 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.8%
UUU79
UUC143
Leu L16.2%
UUA90
UUG17
CUU54
CUC88
CUA299
CUG68
Ile I8.2%
AUU137
AUC176
Met M6.5%
AUA178
AUG68
Val V5.3%
GUU39
GUC37
GUA98
GUG26
Ser S7.7%
UCU38
UCC77
UCA106
UCG11
AGU19
AGC41
Pro P5.1%
CCU24
CCC54
CCA104
CCG13
Thr T8.3%
ACU47
ACC97
ACA147
ACG24
Ala A6.5%
GCU32
GCC114
GCA82
GCG20
Tyr Y3.7%
UAU58
UAC81
His H2.5%
CAU22
CAC73
Gln Q2.4%
CAA83
CAG8
Asn N4.1%
AAU43
AAC111
Lys K2.5%
AAA88
AAG8
Asp D1.7%
GAU18
GAC48
Glu E2.6%
GAA77
GAG20
Cys C0.6%
UGU7
UGC15
Trp W2.7%
UGA93
UGG11
Arg R1.7%
CGU5
CGC13
CGA44
CGG2
Gly G5.7%
GGU32
GGC62
GGA99
GGG23
Stop 0.2%
UAA8
UAG0
AGA0
AGG1

Genome map

38 annotated features in NC_026542.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (41.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16969 bp+–
12S rRNARibosomal RNA701,033964 bp+42.8%
tRNA-ValTransfer RNA1,0341,10168 bp+–
16S rRNARibosomal RNA1,1022,6711,570 bp+40.0%
tRNA-Leu (UUR)Transfer RNA2,6732,74775 bp+–
ND1Protein-coding gene2,7503,705956 bp+43.6%
tRNA-IleTransfer RNA3,7063,77469 bp+–
tRNA-GlnTransfer RNA3,7723,84473 bp−–
tRNA-MetTransfer RNA3,8453,91369 bp+–
ND2Protein-coding gene3,9144,9551,042 bp+41.1%
tRNA-TrpTransfer RNA4,9565,02469 bp+–
tRNA-AlaTransfer RNA5,0295,09769 bp−–
tRNA-AsnTransfer RNA5,0995,17173 bp−–
tRNA-CysTransfer RNA5,2075,27569 bp−–
tRNA-TyrTransfer RNA5,2765,34267 bp−–
COX1Protein-coding gene5,3446,8881,545 bp+43.6%
tRNA-Ser (UCN)Transfer RNA6,8866,95469 bp−–
tRNA-AspTransfer RNA6,9627,02867 bp+–
COX2Protein-coding gene7,0297,712684 bp+43.1%
tRNA-LysTransfer RNA7,7167,78671 bp+–
ATP8Protein-coding gene7,7887,991204 bp+34.3%
ATP6Protein-coding gene7,9498,629681 bp+40.8%
COX3Protein-coding gene8,6299,412784 bp+45.9%
tRNA-GlyTransfer RNA9,4139,48068 bp+–
ND3Protein-coding gene9,4819,828348 bp+42.0%
tRNA-ArgTransfer RNA9,8309,89768 bp+–
ND4LProtein-coding gene9,89810,194297 bp+38.7%
ND4Protein-coding gene10,18811,5651,378 bp+41.2%
tRNA-HisTransfer RNA11,56611,63368 bp+–
tRNA-Ser (UCN)Transfer RNA11,63411,69259 bp+–
tRNA-Leu (CUN)Transfer RNA11,69311,76270 bp+–
ND5Protein-coding gene11,76313,5801,818 bp+39.4%
ND6Protein-coding gene13,57714,104528 bp−39.8%
tRNA-GluTransfer RNA14,10514,17369 bp−–
CYTBProtein-coding gene14,17815,3171,140 bp+44.7%
tRNA-ThrTransfer RNA15,31715,38569 bp+–
tRNA-ProTransfer RNA15,38515,45066 bp−–
D-loopControl region15,45116,5541,104 bp–43.4%

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