Ptychobarbus dipogon
GC content
46.22%
Whole genome
Non-coding
1,203 bp
D-loop 939 bp
Where Ptychobarbus dipogon sits among 2,335 species
Whole-genome GC content against maximum lifespan. Ptychobarbus dipogon has the 208th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,787 bp
- GC skew (G − C) / (G + C)
- −0.173
- AT skew (A − T) / (A + T)
- +0.029
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,787 bp
Protein-coding11,390 bp
12S rRNA956 bp
16S rRNA1,680 bp
All tRNA1,558 bp
D-loop939 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 48.31% | −0.274 | −0.048 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 51.77% | −0.231 | +0.004 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 45.07% | −0.144 | −0.094 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 42.69% | −0.214 | +0.025 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 39.39% | −0.262 | +0.080 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 41.52% | −0.289 | 0.000 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 47.07% | −0.203 | −0.070 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 46.13% | −0.193 | −0.074 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 52.19% | −0.213 | −0.169 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 46.49% | −0.193 | −0.039 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,824 bp | 45.01% | −0.250 | −0.017 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 50.58% | −0.250 | +0.395 | |||||
| CYTBCytochrome b | 1,141 bp | 45.75% | −0.245 | −0.069 | |||||
| 12S rRNA12S ribosomal RNA | 956 bp | 50.63% | −0.058 | +0.199 | |||||
| 16S rRNA16S ribosomal RNA | 1,680 bp | 44.76% | −0.032 | +0.261 | |||||
| D-loopControl region (D-loop) | 939 bp | 36.21% | −0.176 | −0.012 |
Codon usage
Counts per codon, darker is more frequent3,801 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU108
UUC124
Leu L16.3%
UUA87
UUG43
CUU118
CUC108
CUA178
CUG86
Ile I7.1%
AUU167
AUC104
Met M4.5%
AUA93
AUG77
Val V6.9%
GUU71
GUC46
GUA99
GUG45
Ser S6.3%
UCU42
UCC54
UCA64
UCG25
AGU11
AGC45
Pro P5.5%
CCU34
CCC74
CCA88
CCG13
Thr T7.5%
ACU49
ACC99
ACA103
ACG34
Ala A9.5%
GCU71
GCC145
GCA110
GCG34
Tyr Y2.9%
UAU52
UAC60
His H2.7%
CAU29
CAC74
Gln Q2.5%
CAA74
CAG22
Asn N3.0%
AAU47
AAC67
Lys K2.0%
AAA47
AAG28
Asp D1.9%
GAU21
GAC51
Glu E2.7%
GAA78
GAG26
Cys C0.7%
UGU4
UGC21
Trp W3.1%
UGA84
UGG34
Arg R2.1%
CGU7
CGC14
CGA40
CGG17
Gly G6.5%
GGU31
GGC67
GGA85
GGG65
Stop 0.2%
UAA5
UAG2
AGA0
AGG0
Genome map
38 annotated features in NC_024537.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (46.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,025 | 956 bp | + | 50.6% |
| tRNA-Val | Transfer RNA | 1,026 | 1,097 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,098 | 2,777 | 1,680 bp | + | 44.8% |
| tRNA-Leu (UUR) | Transfer RNA | 2,778 | 2,853 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,855 | 3,829 | 975 bp | + | 48.3% |
| tRNA-Ile | Transfer RNA | 3,834 | 3,905 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,904 | 3,974 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,977 | 4,045 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,046 | 5,090 | 1,045 bp | + | 51.8% |
| tRNA-Trp | Transfer RNA | 5,091 | 5,161 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,163 | 5,231 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,233 | 5,305 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,339 | 5,404 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,404 | 5,474 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,476 | 7,026 | 1,551 bp | + | 45.1% |
| tRNA-Ser (UCN) | Transfer RNA | 7,027 | 7,097 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,101 | 7,172 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,186 | 7,876 | 691 bp | + | 42.7% |
| tRNA-Lys | Transfer RNA | 7,877 | 7,952 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,954 | 8,118 | 165 bp | + | 39.4% |
| ATP6 | Protein-coding gene | 8,112 | 8,795 | 684 bp | + | 41.5% |
| COX3 | Protein-coding gene | 8,795 | 9,578 | 784 bp | + | 47.1% |
| tRNA-Gly | Transfer RNA | 9,579 | 9,649 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,650 | 9,998 | 349 bp | + | 46.1% |
| tRNA-Arg | Transfer RNA | 9,999 | 10,068 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,069 | 10,365 | 297 bp | + | 52.2% |
| ND4 | Protein-coding gene | 10,359 | 11,739 | 1,381 bp | + | 46.5% |
| tRNA-His | Transfer RNA | 11,740 | 11,808 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,809 | 11,877 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,879 | 11,951 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,954 | 13,777 | 1,824 bp | + | 45.0% |
| ND6 | Protein-coding gene | 13,774 | 14,295 | 522 bp | − | 50.6% |
| tRNA-Glu | Transfer RNA | 14,296 | 14,364 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,369 | 15,509 | 1,141 bp | + | 45.8% |
| tRNA-Thr | Transfer RNA | 15,510 | 15,581 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,779 | 15,848 | 70 bp | − | – |
| D-loop | Control region | 15,849 | 16,787 | 939 bp | – | 36.2% |