Ptychocheilus lucius
Colorado pikeminnow
GC content
43.25%
Whole genome
Non-coding
979 bp
D-loop 914 bp
Where Colorado pikeminnow sits among 2,335 species
Whole-genome GC content against maximum lifespan. Colorado pikeminnow has the 1,437th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,588 bp
- GC skew (G − C) / (G + C)
- −0.211
- AT skew (A − T) / (A + T)
- +0.047
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,588 bp
Protein-coding11,403 bp
12S rRNA957 bp
16S rRNA1,692 bp
All tRNA1,557 bp
D-loop914 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 44.00% | −0.263 | −0.029 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 44.98% | −0.328 | +0.033 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 43.71% | −0.168 | −0.079 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 41.97% | −0.228 | +0.037 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 42.42% | −0.400 | +0.242 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 41.37% | −0.300 | −0.007 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 45.41% | −0.219 | −0.056 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 46.71% | −0.276 | −0.054 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 44.78% | −0.323 | −0.037 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,382 bp | 42.76% | −0.279 | −0.014 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 41.56% | −0.295 | +0.033 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 44.06% | −0.417 | +0.390 | |||||
| CYTBCytochrome b | 1,141 bp | 41.72% | −0.265 | −0.047 | |||||
| 12S rRNA12S ribosomal RNA | 957 bp | 49.01% | −0.049 | +0.209 | |||||
| 16S rRNA16S ribosomal RNA | 1,692 bp | 42.85% | −0.034 | +0.237 | |||||
| D-loopControl region (D-loop) | 914 bp | 36.43% | −0.201 | +0.012 |
Codon usage
Counts per codon, darker is more frequent3,805 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU119
UUC108
Leu L16.6%
UUA129
UUG21
CUU139
CUC84
CUA214
CUG43
Ile I7.4%
AUU196
AUC84
Met M4.7%
AUA127
AUG50
Val V6.2%
GUU60
GUC35
GUA107
GUG35
Ser S6.3%
UCU50
UCC41
UCA81
UCG12
AGU19
AGC38
Pro P5.6%
CCU47
CCC67
CCA86
CCG12
Thr T7.6%
ACU40
ACC102
ACA128
ACG19
Ala A9.1%
GCU55
GCC149
GCA122
GCG22
Tyr Y3.0%
UAU55
UAC59
His H2.7%
CAU39
CAC63
Gln Q2.6%
CAA81
CAG18
Asn N3.1%
AAU53
AAC65
Lys K2.1%
AAA63
AAG16
Asp D2.0%
GAU27
GAC50
Glu E2.7%
GAA71
GAG31
Cys C0.7%
UGU11
UGC15
Trp W3.2%
UGA106
UGG14
Arg R2.0%
CGU6
CGC16
CGA41
CGG13
Gly G6.4%
GGU40
GGC61
GGA89
GGG54
Stop 0.2%
UAA5
UAG2
AGA0
AGG0
Genome map
38 annotated features in NC_054086.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (43.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,026 | 957 bp | + | 49.0% |
| tRNA-Val | Transfer RNA | 1,027 | 1,098 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,099 | 2,790 | 1,692 bp | + | 42.9% |
| tRNA-Leu (UUR) | Transfer RNA | 2,791 | 2,866 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,868 | 3,842 | 975 bp | + | 44.0% |
| tRNA-Ile | Transfer RNA | 3,847 | 3,917 | 71 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,917 | 3,989 | 73 bp | − | – |
| tRNA-Met | Transfer RNA | 3,989 | 4,057 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,058 | 5,102 | 1,045 bp | + | 45.0% |
| tRNA-Trp | Transfer RNA | 5,103 | 5,173 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,175 | 5,243 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,245 | 5,317 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,349 | 5,415 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,418 | 5,488 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,490 | 7,040 | 1,551 bp | + | 43.7% |
| tRNA-Ser (UCN) | Transfer RNA | 7,041 | 7,111 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,115 | 7,187 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,200 | 7,890 | 691 bp | + | 42.0% |
| tRNA-Lys | Transfer RNA | 7,891 | 7,966 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,968 | 8,132 | 165 bp | + | 42.4% |
| ATP6 | Protein-coding gene | 8,126 | 8,809 | 684 bp | + | 41.4% |
| COX3 | Protein-coding gene | 8,809 | 9,592 | 784 bp | + | 45.4% |
| tRNA-Gly | Transfer RNA | 9,593 | 9,664 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,665 | 10,013 | 349 bp | + | 46.7% |
| tRNA-Arg | Transfer RNA | 10,014 | 10,082 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,083 | 10,379 | 297 bp | + | 44.8% |
| ND4 | Protein-coding gene | 10,373 | 11,754 | 1,382 bp | + | 42.8% |
| tRNA-His | Transfer RNA | 11,755 | 11,823 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,826 | 11,891 | 66 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,894 | 11,966 | 73 bp | − | – |
| ND5 | Protein-coding gene | 11,967 | 13,802 | 1,836 bp | + | 41.6% |
| ND6 | Protein-coding gene | 13,799 | 14,320 | 522 bp | − | 44.1% |
| tRNA-Glu | Transfer RNA | 14,321 | 14,389 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,394 | 15,534 | 1,141 bp | + | 41.7% |
| tRNA-Thr | Transfer RNA | 15,535 | 15,607 | 73 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,606 | 15,674 | 69 bp | − | – |
| D-loop | Control region | 15,675 | 16,588 | 914 bp | – | 36.4% |