Pungitius hellenicus
GC content
46.17%
Whole genome
Non-coding
1,132 bp
D-loop 1,062 bp
Where Pungitius hellenicus sits among 2,335 species
Whole-genome GC content against maximum lifespan. Pungitius hellenicus has the 2,291st longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,713 bp
- GC skew (G − C) / (G + C)
- −0.240
- AT skew (A − T) / (A + T)
- +0.019
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,713 bp
Protein-coding11,406 bp
12S rRNA943 bp
16S rRNA1,687 bp
All tRNA1,545 bp
D-loop1,062 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 46.67% | −0.323 | −0.135 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 46.60% | −0.400 | +0.007 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 47.39% | −0.205 | −0.100 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 44.72% | −0.256 | +0.005 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 48.21% | −0.309 | −0.057 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 45.32% | −0.381 | −0.102 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 48.28% | −0.303 | −0.044 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 50.14% | −0.303 | −0.195 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 51.85% | −0.273 | −0.203 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 44.39% | −0.312 | −0.049 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 45.62% | −0.318 | −0.028 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 49.23% | −0.331 | +0.426 | |||||
| CYTBCytochrome b | 1,141 bp | 46.28% | −0.314 | −0.067 | |||||
| 12S rRNA12S ribosomal RNA | 943 bp | 47.40% | −0.065 | +0.194 | |||||
| 16S rRNA16S ribosomal RNA | 1,687 bp | 45.88% | −0.059 | +0.209 | |||||
| D-loopControl region (D-loop) | 1,062 bp | 38.70% | −0.144 | +0.072 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.3%
UUU117
UUC122
Leu L16.8%
UUA102
UUG32
CUU155
CUC130
CUA161
CUG60
Ile I7.3%
AUU145
AUC134
Met M4.0%
AUA85
AUG68
Val V6.0%
GUU78
GUC62
GUA63
GUG27
Ser S6.5%
UCU54
UCC65
UCA58
UCG14
AGU10
AGC46
Pro P5.7%
CCU53
CCC93
CCA63
CCG8
Thr T7.8%
ACU65
ACC116
ACA99
ACG16
Ala A9.1%
GCU87
GCC151
GCA92
GCG15
Tyr Y2.8%
UAU31
UAC76
His H2.8%
CAU26
CAC79
Gln Q2.7%
CAA83
CAG18
Asn N3.2%
AAU32
AAC90
Lys K1.8%
AAA55
AAG14
Asp D2.0%
GAU23
GAC53
Glu E2.6%
GAA70
GAG29
Cys C0.7%
UGU5
UGC20
Trp W3.1%
UGA88
UGG31
Arg R2.1%
CGU12
CGC15
CGA44
CGG8
Gly G6.6%
GGU36
GGC84
GGA76
GGG56
Stop 0.2%
UAA7
UAG0
AGA0
AGG0
Genome map
38 annotated features in NC_029471.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (46.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,011 | 943 bp | + | 47.4% |
| tRNA-Val | Transfer RNA | 1,012 | 1,083 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,084 | 2,770 | 1,687 bp | + | 45.9% |
| tRNA-Leu (UUR) | Transfer RNA | 2,771 | 2,844 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,845 | 3,819 | 975 bp | + | 46.7% |
| tRNA-Ile | Transfer RNA | 3,823 | 3,892 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,892 | 3,962 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,962 | 4,030 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,031 | 5,075 | 1,045 bp | + | 46.6% |
| tRNA-Trp | Transfer RNA | 5,076 | 5,144 | 69 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,146 | 5,214 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,216 | 5,288 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,323 | 5,386 | 64 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,387 | 5,456 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,458 | 7,008 | 1,551 bp | + | 47.4% |
| tRNA-Ser (UCN) | Transfer RNA | 7,009 | 7,079 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,083 | 7,155 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,170 | 7,860 | 691 bp | + | 44.7% |
| tRNA-Lys | Transfer RNA | 7,861 | 7,934 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,936 | 8,103 | 168 bp | + | 48.2% |
| ATP6 | Protein-coding gene | 8,094 | 8,777 | 684 bp | + | 45.3% |
| COX3 | Protein-coding gene | 8,777 | 9,561 | 785 bp | + | 48.3% |
| tRNA-Gly | Transfer RNA | 9,562 | 9,632 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,633 | 9,981 | 349 bp | + | 50.1% |
| tRNA-Arg | Transfer RNA | 9,982 | 10,050 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,051 | 10,347 | 297 bp | + | 51.9% |
| ND4 | Protein-coding gene | 10,341 | 11,721 | 1,381 bp | + | 44.4% |
| tRNA-His | Transfer RNA | 11,722 | 11,789 | 68 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,790 | 11,857 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,862 | 11,934 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,938 | 13,776 | 1,839 bp | + | 45.6% |
| ND6 | Protein-coding gene | 13,773 | 14,294 | 522 bp | − | 49.2% |
| tRNA-Glu | Transfer RNA | 14,295 | 14,364 | 70 bp | − | – |
| CYTB | Protein-coding gene | 14,370 | 15,510 | 1,141 bp | + | 46.3% |
| tRNA-Thr | Transfer RNA | 15,511 | 15,582 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,582 | 15,651 | 70 bp | − | – |
| D-loop | Control region | 15,652 | 16,713 | 1,062 bp | – | 38.7% |