Pungitius pungitius

Ninespine stickleback

Maximum lifespan

5 yr

AnAge record

mtDNA size

16,388 bp

RefSeq NC_011571.1

GC content

45.73%

Whole genome

Non-coding

803 bp

D-loop 728 bp

Where Ninespine stickleback sits among 2,335 species

Whole-genome GC content against maximum lifespan. Ninespine stickleback has the 1,986th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,388 bp

GC skew (G − C) / (G + C): −0.243
AT skew (A − T) / (A + T): +0.013

Life history

Maximum lifespan: 5 years
Female sexual maturity: 547 days
Male sexual maturity: 547 days

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04052)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,388 bp

Protein-coding11,411 bp

12S rRNA944 bp

16S rRNA1,689 bp

All tRNA1,546 bp

D-loop728 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Pungitius pungitius genes

ND1NADH dehydrogenase subunit 1	975 bp	22.6%	31.1%	16.6%	29.7%	46.36%	−0.283	−0.159
ND2NADH dehydrogenase subunit 2	1,047 bp	26.7%	28.0%	13.6%	31.7%	45.27%	−0.401	−0.023
COX1Cytochrome c oxidase subunit I	1,551 bp	24.0%	29.3%	18.4%	28.2%	46.62%	−0.209	−0.099
COX2Cytochrome c oxidase subunit II	691 bp	28.5%	27.6%	15.8%	28.1%	43.85%	−0.281	+0.015
ATP8ATP synthase F0 subunit 8	168 bp	27.4%	27.4%	13.7%	31.5%	45.24%	−0.395	0.000
ATP6ATP synthase F0 subunit 6	684 bp	24.6%	30.8%	13.3%	31.3%	44.59%	−0.403	−0.113
COX3Cytochrome c oxidase subunit III	786 bp	24.9%	27.1%	16.8%	31.2%	47.96%	−0.300	−0.042
ND3NADH dehydrogenase subunit 3	351 bp	21.9%	28.8%	16.8%	32.5%	49.29%	−0.318	−0.135
ND4LNADH dehydrogenase subunit 4L	297 bp	20.9%	29.3%	16.8%	33.0%	49.83%	−0.324	−0.168
ND4NADH dehydrogenase subunit 4	1,381 bp	26.4%	28.9%	15.4%	29.3%	44.75%	−0.311	−0.046
ND5NADH dehydrogenase subunit 5	1,839 bp	26.4%	29.0%	15.5%	29.0%	44.54%	−0.304	−0.047
ND6NADH dehydrogenase subunit 6	522 bp	37.4%	15.7%	14.9%	32.0%	46.94%	−0.363	+0.408
CYTBCytochrome b	1,141 bp	24.9%	28.1%	16.1%	30.9%	46.98%	−0.313	−0.061
12S rRNA12S ribosomal RNA	944 bp	31.3%	21.1%	22.2%	25.4%	47.67%	−0.067	+0.194
16S rRNA16S ribosomal RNA	1,689 bp	33.0%	21.9%	21.1%	23.9%	45.06%	−0.062	+0.203
D-loopControl region (D-loop)	728 bp	34.5%	29.0%	15.2%	21.3%	36.54%	−0.165	+0.087

Codon usage

Counts per codon, darker is more frequent

Gene

3,810 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.3%

UUU116

UUC124

Leu L16.7%

UUA103

UUG25

CUU169

CUC111

CUA184

CUG44

Ile I7.3%

AUU147

AUC131

Met M3.8%

AUA83

AUG63

Val V6.2%

GUU91

GUC56

GUA61

GUG30

Ser S6.5%

UCU49

UCC78

UCA56

UCG12

AGU11

AGC43

Pro P5.6%

CCU62

CCC75

CCA66

CCG10

Thr T7.7%

ACU59

ACC119

ACA101

ACG13

Ala A9.3%

GCU95

GCC151

GCA97

GCG13

Tyr Y2.8%

UAU36

UAC72

His H2.8%

CAU26

CAC79

Gln Q2.7%

CAA82

CAG19

Asn N3.2%

AAU39

AAC82

Lys K1.8%

AAA56

AAG14

Asp D2.1%

GAU27

GAC52

Glu E2.5%

GAA73

GAG24

Cys C0.6%

UGU6

UGC18

Trp W3.1%

UGA92

UGG26

Arg R2.1%

CGU13

CGC13

CGA42

CGG12

Gly G6.5%

GGU39

GGC79

GGA79

GGG52

Stop 0.3%

UAA8

UAG2

AGA0

AGG0

Genome map

38 annotated features in NC_011571.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (45.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Pungitius pungitius (NC_011571.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	68	68 bp	+	–
12S rRNA	Ribosomal RNA	69	1,012	944 bp	+	47.7%
tRNA-Val	Transfer RNA	1,013	1,084	72 bp	+	–
16S rRNA	Ribosomal RNA	1,085	2,773	1,689 bp	+	45.1%
tRNA-Leu (UUR)	Transfer RNA	2,774	2,847	74 bp	+	–
ND1	Protein-coding gene	2,848	3,822	975 bp	+	46.4%
tRNA-Ile	Transfer RNA	3,826	3,895	70 bp	+	–
tRNA-Gln	Transfer RNA	3,895	3,965	71 bp	−	–
tRNA-Met	Transfer RNA	3,965	4,033	69 bp	+	–
ND2	Protein-coding gene	4,034	5,080	1,047 bp	+	45.3%
tRNA-Trp	Transfer RNA	5,079	5,147	69 bp	+	–
tRNA-Ala	Transfer RNA	5,149	5,217	69 bp	−	–
tRNA-Asn	Transfer RNA	5,219	5,291	73 bp	−	–
tRNA-Cys	Transfer RNA	5,327	5,390	64 bp	−	–
tRNA-Tyr	Transfer RNA	5,391	5,460	70 bp	−	–
COX1	Protein-coding gene	5,462	7,012	1,551 bp	+	46.6%
tRNA-Ser (UCN)	Transfer RNA	7,013	7,082	70 bp	−	–
tRNA-Asp	Transfer RNA	7,086	7,160	75 bp	+	–
COX2	Protein-coding gene	7,179	7,869	691 bp	+	43.9%
tRNA-Lys	Transfer RNA	7,870	7,943	74 bp	+	–
ATP8	Protein-coding gene	7,945	8,112	168 bp	+	45.2%
ATP6	Protein-coding gene	8,103	8,786	684 bp	+	44.6%
COX3	Protein-coding gene	8,786	9,571	786 bp	+	48.0%
tRNA-Gly	Transfer RNA	9,571	9,641	71 bp	+	–
ND3	Protein-coding gene	9,642	9,992	351 bp	+	49.3%
tRNA-Arg	Transfer RNA	9,991	10,059	69 bp	+	–
ND4L	Protein-coding gene	10,060	10,356	297 bp	+	49.8%
ND4	Protein-coding gene	10,350	11,730	1,381 bp	+	44.8%
tRNA-His	Transfer RNA	11,731	11,798	68 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,799	11,866	68 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,871	11,943	73 bp	+	–
ND5	Protein-coding gene	11,947	13,785	1,839 bp	+	44.5%
ND6	Protein-coding gene	13,782	14,303	522 bp	−	46.9%
tRNA-Glu	Transfer RNA	14,304	14,373	70 bp	−	–
CYTB	Protein-coding gene	14,379	15,519	1,141 bp	+	47.0%
tRNA-Thr	Transfer RNA	15,520	15,591	72 bp	+	–
tRNA-Pro	Transfer RNA	15,591	15,660	70 bp	−	–
D-loop	Control region	15,661	16,388	728 bp	–	36.5%