Pusa hispida
Ringed seal
GC content
41.30%
Whole genome
Non-coding
1,378 bp
D-loop 1,319 bp
Where Ringed seal sits among 2,335 species
Whole-genome GC content against maximum lifespan. Ringed seal has the 186th longest lifespan of them.
- This species
- Other mammals
- Other classes
Base composition
Whole genome16,754 bp
- GC skew (G − C) / (G + C)
- −0.316
- AT skew (A − T) / (A + T)
- +0.128
Life history
- Maximum lifespan
- 46 years
- Adult weight
- 90 kg
- Birth weight
- 6 kg
- Female sexual maturity
- 5 years
- Male sexual maturity
- 6 years
- Gestation or incubation
- 251 days
- Litter or clutch size
- 1
- Litters per year
- 1
Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02236)
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in captivity
- Data quality
- acceptable, tiny sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,754 bp
Protein-coding11,340 bp
12S rRNA961 bp
16S rRNA1,571 bp
All tRNA1,508 bp
D-loop1,319 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 956 bp | 42.68% | −0.417 | +0.084 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,042 bp | 39.54% | −0.490 | +0.200 | |||||
| COX1Cytochrome c oxidase subunit I | 1,545 bp | 44.21% | −0.186 | −0.016 | |||||
| COX2Cytochrome c oxidase subunit II | 684 bp | 40.94% | −0.300 | +0.158 | |||||
| ATP8ATP synthase F0 subunit 8 | 204 bp | 36.77% | −0.573 | +0.240 | |||||
| ATP6ATP synthase F0 subunit 6 | 681 bp | 41.56% | −0.463 | +0.035 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 44.01% | −0.328 | −0.011 | |||||
| ND3NADH dehydrogenase subunit 3 | 347 bp | 44.67% | −0.419 | +0.115 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 41.08% | −0.344 | −0.017 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,379 bp | 42.20% | −0.419 | +0.107 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,821 bp | 41.46% | −0.438 | +0.105 | |||||
| ND6NADH dehydrogenase subunit 6 | 528 bp | 38.26% | −0.475 | +0.393 | |||||
| CYTBCytochrome b | 1,140 bp | 43.42% | −0.406 | +0.107 | |||||
| 12S rRNA12S ribosomal RNA | 961 bp | 41.31% | −0.154 | +0.255 | |||||
| 16S rRNA16S ribosomal RNA | 1,571 bp | 38.19% | −0.093 | +0.252 | |||||
| D-loopControl region (D-loop) | 1,319 bp | 42.53% | −0.248 | +0.100 |
Codon usage
Counts per codon, darker is more frequent3,800 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU74
UUC156
Leu L15.8%
UUA74
UUG18
CUU60
CUC94
CUA301
CUG52
Ile I8.9%
AUU136
AUC201
Met M6.4%
AUA187
AUG57
Val V4.9%
GUU24
GUC46
GUA92
GUG26
Ser S7.4%
UCU33
UCC74
UCA107
UCG9
AGU19
AGC39
Pro P5.2%
CCU47
CCC78
CCA65
CCG6
Thr T8.3%
ACU44
ACC111
ACA144
ACG18
Ala A6.7%
GCU46
GCC100
GCA104
GCG4
Tyr Y3.5%
UAU46
UAC86
His H2.7%
CAU38
CAC66
Gln Q2.3%
CAA73
CAG13
Asn N3.9%
AAU45
AAC103
Lys K2.6%
AAA90
AAG10
Asp D1.8%
GAU26
GAC44
Glu E2.6%
GAA75
GAG24
Cys C0.6%
UGU7
UGC17
Trp W2.7%
UGA96
UGG8
Arg R1.7%
CGU3
CGC14
CGA43
CGG4
Gly G5.7%
GGU33
GGC51
GGA103
GGG28
Stop 0.2%
UAA7
UAG0
AGA1
AGG0
Genome map
38 annotated features in NC_008433.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (41.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 70 | 70 bp | + | – |
| 12S rRNA | Ribosomal RNA | 71 | 1,031 | 961 bp | + | 41.3% |
| tRNA-Val | Transfer RNA | 1,032 | 1,098 | 67 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,099 | 2,669 | 1,571 bp | + | 38.2% |
| tRNA-Leu (UUR) | Transfer RNA | 2,670 | 2,743 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,746 | 3,701 | 956 bp | + | 42.7% |
| tRNA-Ile | Transfer RNA | 3,702 | 3,770 | 69 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,768 | 3,840 | 73 bp | − | – |
| tRNA-Met | Transfer RNA | 3,842 | 3,910 | 69 bp | + | – |
| ND2 | Protein-coding gene | 3,911 | 4,952 | 1,042 bp | + | 39.5% |
| tRNA-Trp | Transfer RNA | 4,953 | 5,019 | 67 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,030 | 5,098 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,100 | 5,172 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,205 | 5,271 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,272 | 5,339 | 68 bp | − | – |
| COX1 | Protein-coding gene | 5,341 | 6,885 | 1,545 bp | + | 44.2% |
| tRNA-Ser (UCN) | Transfer RNA | 6,883 | 6,951 | 69 bp | − | – |
| tRNA-Asp | Transfer RNA | 6,958 | 7,024 | 67 bp | + | – |
| COX2 | Protein-coding gene | 7,025 | 7,708 | 684 bp | + | 40.9% |
| tRNA-Lys | Transfer RNA | 7,710 | 7,778 | 69 bp | + | – |
| ATP8 | Protein-coding gene | 7,780 | 7,983 | 204 bp | + | 36.8% |
| ATP6 | Protein-coding gene | 7,941 | 8,621 | 681 bp | + | 41.6% |
| COX3 | Protein-coding gene | 8,621 | 9,404 | 784 bp | + | 44.0% |
| tRNA-Gly | Transfer RNA | 9,405 | 9,472 | 68 bp | + | – |
| ND3 | Protein-coding gene | 9,473 | 9,819 | 347 bp | + | 44.7% |
| tRNA-Arg | Transfer RNA | 9,820 | 9,888 | 69 bp | + | – |
| ND4L | Protein-coding gene | 9,889 | 10,185 | 297 bp | + | 41.1% |
| ND4 | Protein-coding gene | 10,179 | 11,557 | 1,379 bp | + | 42.2% |
| tRNA-His | Transfer RNA | 11,557 | 11,625 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,626 | 11,684 | 59 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,685 | 11,754 | 70 bp | + | – |
| ND5 | Protein-coding gene | 11,755 | 13,575 | 1,821 bp | + | 41.5% |
| ND6 | Protein-coding gene | 13,559 | 14,086 | 528 bp | − | 38.3% |
| tRNA-Glu | Transfer RNA | 14,087 | 14,155 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,160 | 15,299 | 1,140 bp | + | 43.4% |
| tRNA-Thr | Transfer RNA | 15,300 | 15,369 | 70 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,369 | 15,435 | 67 bp | − | – |
| D-loop | Control region | 15,436 | 16,754 | 1,319 bp | – | 42.5% |