Pygoplites diacanthus
Royal angelfish
GC content
45.43%
Whole genome
Non-coding
691 bp
D-loop 642 bp
Where Royal angelfish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Royal angelfish has the 1,270th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,313 bp
- GC skew (G − C) / (G + C)
- −0.282
- AT skew (A − T) / (A + T)
- +0.040
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Updated in build 2
- In the database since
- build 1 (2015-07-01)
- Last changed
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,313 bp
Protein-coding11,401 bp
12S rRNA949 bp
16S rRNA1,698 bp
All tRNA1,580 bp
D-loop642 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 46.05% | −0.354 | −0.034 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 49.33% | −0.442 | +0.011 | |||||
| COX1Cytochrome c oxidase subunit I | 1,545 bp | 44.79% | −0.220 | −0.050 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 44.57% | −0.273 | +0.055 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 44.05% | −0.405 | +0.021 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 43.86% | −0.407 | −0.073 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 47.90% | −0.330 | −0.037 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 49.00% | −0.415 | −0.135 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 49.50% | −0.388 | −0.120 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 46.56% | −0.387 | −0.035 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 45.30% | −0.373 | −0.004 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 43.68% | −0.386 | +0.422 | |||||
| CYTBCytochrome b | 1,141 bp | 46.10% | −0.335 | −0.057 | |||||
| 12S rRNA12S ribosomal RNA | 949 bp | 48.58% | −0.085 | +0.156 | |||||
| 16S rRNA16S ribosomal RNA | 1,698 bp | 44.82% | −0.138 | +0.232 | |||||
| D-loopControl region (D-loop) | 642 bp | 33.02% | −0.085 | +0.098 |
Codon usage
Counts per codon, darker is more frequent3,805 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.4%
UUU95
UUC147
Leu L17.5%
UUA93
UUG14
CUU152
CUC158
CUA199
CUG49
Ile I6.9%
AUU139
AUC124
Met M4.1%
AUA107
AUG49
Val V6.1%
GUU63
GUC66
GUA77
GUG27
Ser S6.3%
UCU50
UCC65
UCA57
UCG9
AGU9
AGC48
Pro P5.7%
CCU68
CCC95
CCA44
CCG10
Thr T7.6%
ACU56
ACC123
ACA102
ACG9
Ala A9.1%
GCU69
GCC148
GCA117
GCG14
Tyr Y3.0%
UAU38
UAC75
His H2.8%
CAU39
CAC68
Gln Q2.7%
CAA98
CAG6
Asn N3.0%
AAU31
AAC83
Lys K1.9%
AAA65
AAG9
Asp D1.9%
GAU21
GAC53
Glu E2.7%
GAA82
GAG20
Cys C0.6%
UGU4
UGC20
Trp W3.0%
UGA103
UGG13
Arg R2.0%
CGU5
CGC12
CGA52
CGG9
Gly G6.3%
GGU39
GGC84
GGA74
GGG43
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_026545.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,017 | 949 bp | + | 48.6% |
| tRNA-Val | Transfer RNA | 1,024 | 1,096 | 73 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,098 | 2,795 | 1,698 bp | + | 44.8% |
| tRNA-Leu (UUR) | Transfer RNA | 2,797 | 2,872 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,873 | 3,847 | 975 bp | + | 46.1% |
| tRNA-Ile | Transfer RNA | 3,850 | 3,921 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,920 | 3,990 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,989 | 4,061 | 73 bp | + | – |
| ND2 | Protein-coding gene | 4,061 | 5,106 | 1,046 bp | + | 49.3% |
| tRNA-Trp | Transfer RNA | 5,135 | 5,208 | 74 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,208 | 5,277 | 70 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,281 | 5,353 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,391 | 5,463 | 73 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,464 | 5,533 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,541 | 7,085 | 1,545 bp | + | 44.8% |
| tRNA-Ser (UCN) | Transfer RNA | 7,089 | 7,157 | 69 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,163 | 7,234 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,251 | 7,941 | 691 bp | + | 44.6% |
| tRNA-Lys | Transfer RNA | 7,941 | 8,017 | 77 bp | + | – |
| ATP8 | Protein-coding gene | 8,018 | 8,185 | 168 bp | + | 44.1% |
| ATP6 | Protein-coding gene | 8,176 | 8,859 | 684 bp | + | 43.9% |
| COX3 | Protein-coding gene | 8,859 | 9,643 | 785 bp | + | 47.9% |
| tRNA-Gly | Transfer RNA | 9,644 | 9,715 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,716 | 10,064 | 349 bp | + | 49.0% |
| tRNA-Arg | Transfer RNA | 10,064 | 10,134 | 71 bp | + | – |
| ND4L | Protein-coding gene | 10,134 | 10,430 | 297 bp | + | 49.5% |
| ND4 | Protein-coding gene | 10,424 | 11,804 | 1,381 bp | + | 46.6% |
| tRNA-His | Transfer RNA | 11,805 | 11,874 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,875 | 11,945 | 71 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,948 | 12,020 | 73 bp | + | – |
| ND5 | Protein-coding gene | 12,021 | 13,859 | 1,839 bp | + | 45.3% |
| ND6 | Protein-coding gene | 13,856 | 14,377 | 522 bp | − | 43.7% |
| tRNA-Glu | Transfer RNA | 14,377 | 14,447 | 71 bp | − | – |
| CYTB | Protein-coding gene | 14,451 | 15,591 | 1,141 bp | + | 46.1% |
| tRNA-Thr | Transfer RNA | 15,592 | 15,666 | 75 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,663 | 15,736 | 74 bp | − | – |
| D-loop | Control region | 15,672 | 16,313 | 642 bp | – | 33.0% |