Rachycentron canadum

Cobia

Maximum lifespan

15 yr

AnAge record

mtDNA size

16,758 bp

RefSeq NC_011219.1

GC content

42.88%

Whole genome

Non-coding

1,162 bp

D-loop 1,068 bp

Where Cobia sits among 2,335 species

Whole-genome GC content against maximum lifespan. Cobia has the 1,210th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,758 bp

GC skew (G − C) / (G + C): −0.273
AT skew (A − T) / (A + T): +0.026

Life history

Maximum lifespan: 15 years
Adult weight: 37.4 kg

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04331)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,758 bp

Protein-coding11,402 bp

12S rRNA928 bp

16S rRNA1,716 bp

All tRNA1,555 bp

D-loop1,068 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Rachycentron canadum genes

ND1NADH dehydrogenase subunit 1	975 bp	27.8%	28.8%	13.8%	29.5%	43.39%	−0.362	−0.018
ND2NADH dehydrogenase subunit 2	1,045 bp	30.0%	27.6%	11.9%	30.6%	42.49%	−0.441	+0.042
COX1Cytochrome c oxidase subunit I	1,554 bp	25.7%	30.4%	18.0%	25.9%	43.95%	−0.180	−0.084
COX2Cytochrome c oxidase subunit II	691 bp	27.9%	28.9%	15.8%	27.4%	43.13%	−0.268	−0.018
ATP8ATP synthase F0 subunit 8	168 bp	35.1%	30.4%	8.9%	25.6%	34.52%	−0.483	+0.073
ATP6ATP synthase F0 subunit 6	684 bp	28.8%	30.7%	13.3%	27.2%	40.50%	−0.343	−0.032
COX3Cytochrome c oxidase subunit III	785 bp	27.9%	28.4%	16.6%	27.1%	43.69%	−0.242	−0.009
ND3NADH dehydrogenase subunit 3	349 bp	23.5%	32.7%	15.2%	28.7%	43.84%	−0.307	−0.163
ND4LNADH dehydrogenase subunit 4L	297 bp	20.5%	29.0%	15.8%	34.7%	50.51%	−0.373	−0.170
ND4NADH dehydrogenase subunit 4	1,381 bp	28.0%	30.1%	13.0%	28.9%	41.85%	−0.381	−0.036
ND5NADH dehydrogenase subunit 5	1,833 bp	28.0%	28.2%	13.4%	30.3%	43.75%	−0.387	−0.003
ND6NADH dehydrogenase subunit 6	543 bp	40.3%	14.9%	10.3%	34.4%	44.75%	−0.539	+0.460
CYTBCytochrome b	1,141 bp	24.8%	31.7%	14.5%	29.0%	43.47%	−0.335	−0.122
12S rRNA12S ribosomal RNA	928 bp	29.6%	22.6%	22.3%	25.4%	47.74%	−0.065	+0.134
16S rRNA16S ribosomal RNA	1,716 bp	34.8%	22.6%	19.3%	23.1%	42.44%	−0.089	+0.213
D-loopControl region (D-loop)	1,068 bp	31.7%	30.9%	14.3%	23.0%	37.36%	−0.233	+0.013

Codon usage

Counts per codon, darker is more frequent

Gene

3,813 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.3%

UUU128

UUC114

Leu L17.0%

UUA143

UUG14

CUU143

CUC110

CUA199

CUG41

Ile I7.4%

AUU160

AUC123

Met M4.4%

AUA110

AUG58

Val V5.5%

GUU68

GUC42

GUA74

GUG27

Ser S6.7%

UCU55

UCC67

UCA73

UCG4

AGU15

AGC41

Pro P5.5%

CCU61

CCC72

CCA76

CCG2

Thr T8.1%

ACU80

ACC92

ACA129

ACG9

Ala A8.8%

GCU86

GCC138

GCA104

GCG6

Tyr Y2.9%

UAU48

UAC64

His H2.8%

CAU40

CAC65

Gln Q2.5%

CAA86

CAG11

Asn N2.9%

AAU52

AAC60

Lys K2.0%

AAA69

AAG8

Asp D2.0%

GAU24

GAC52

Glu E2.6%

GAA77

GAG22

Cys C0.8%

UGU12

UGC17

Trp W3.1%

UGA100

UGG20

Arg R2.0%

CGU10

CGC13

CGA51

CGG4

Gly G6.2%

GGU32

GGC79

GGA70

GGG56

Stop 0.2%

UAA5

UAG1

AGA1

AGG0

Genome map

38 annotated features in NC_011219.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (42.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Rachycentron canadum (NC_011219.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	68	68 bp	+	–
12S rRNA	Ribosomal RNA	69	996	928 bp	+	47.7%
tRNA-Val	Transfer RNA	997	1,069	73 bp	+	–
16S rRNA	Ribosomal RNA	1,070	2,785	1,716 bp	+	42.4%
tRNA-Leu (UUR)	Transfer RNA	2,786	2,859	74 bp	+	–
ND1	Protein-coding gene	2,860	3,834	975 bp	+	43.4%
tRNA-Ile	Transfer RNA	3,855	3,926	72 bp	+	–
tRNA-Gln	Transfer RNA	3,926	3,996	71 bp	−	–
tRNA-Met	Transfer RNA	3,996	4,064	69 bp	+	–
ND2	Protein-coding gene	4,065	5,109	1,045 bp	+	42.5%
tRNA-Trp	Transfer RNA	5,110	5,181	72 bp	+	–
tRNA-Ala	Transfer RNA	5,183	5,251	69 bp	−	–
tRNA-Asn	Transfer RNA	5,253	5,325	73 bp	−	–
tRNA-Cys	Transfer RNA	5,353	5,420	68 bp	−	–
tRNA-Tyr	Transfer RNA	5,425	5,494	70 bp	−	–
COX1	Protein-coding gene	5,496	7,049	1,554 bp	+	44.0%
tRNA-Ser (UCN)	Transfer RNA	7,045	7,115	71 bp	−	–
tRNA-Asp	Transfer RNA	7,118	7,186	69 bp	+	–
COX2	Protein-coding gene	7,191	7,881	691 bp	+	43.1%
tRNA-Lys	Transfer RNA	7,882	7,956	75 bp	+	–
ATP8	Protein-coding gene	7,960	8,127	168 bp	+	34.5%
ATP6	Protein-coding gene	8,118	8,801	684 bp	+	40.5%
COX3	Protein-coding gene	8,801	9,585	785 bp	+	43.7%
tRNA-Gly	Transfer RNA	9,586	9,657	72 bp	+	–
ND3	Protein-coding gene	9,659	10,007	349 bp	+	43.8%
tRNA-Arg	Transfer RNA	10,008	10,076	69 bp	+	–
ND4L	Protein-coding gene	10,077	10,373	297 bp	+	50.5%
ND4	Protein-coding gene	10,367	11,747	1,381 bp	+	41.9%
tRNA-His	Transfer RNA	11,748	11,815	68 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,816	11,883	68 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,887	11,959	73 bp	+	–
ND5	Protein-coding gene	11,960	13,792	1,833 bp	+	43.8%
ND6	Protein-coding gene	13,767	14,309	543 bp	−	44.8%
tRNA-Glu	Transfer RNA	14,310	14,378	69 bp	−	–
CYTB	Protein-coding gene	14,379	15,519	1,141 bp	+	43.5%
tRNA-Thr	Transfer RNA	15,520	15,592	73 bp	+	–
tRNA-Pro	Transfer RNA	15,620	15,690	71 bp	−	–
D-loop	Control region	15,691	16,758	1,068 bp	–	37.4%