Rasbora trilineata
Three-lined rasbora
GC content
41.08%
Whole genome
Non-coding
1,157 bp
D-loop 942 bp
Where Three-lined rasbora sits among 2,335 species
Whole-genome GC content against maximum lifespan. Three-lined rasbora has the 2,088th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,747 bp
- GC skew (G − C) / (G + C)
- −0.287
- AT skew (A − T) / (A + T)
- +0.140
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in captivity
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,747 bp
Protein-coding11,394 bp
12S rRNA953 bp
16S rRNA1,688 bp
All tRNA1,555 bp
D-loop942 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 40.62% | −0.389 | +0.147 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 40.29% | −0.511 | +0.266 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 42.62% | −0.189 | −0.025 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 40.38% | −0.204 | +0.058 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 33.94% | −0.429 | +0.009 | |||||
| ATP6ATP synthase F0 subunit 6 | 680 bp | 39.12% | −0.436 | +0.039 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 44.33% | −0.276 | +0.076 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 42.98% | −0.373 | +0.035 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 45.12% | −0.373 | +0.043 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 39.46% | −0.376 | +0.139 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,830 bp | 38.47% | −0.389 | +0.151 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 39.27% | −0.493 | +0.533 | |||||
| CYTBCytochrome b | 1,141 bp | 41.63% | −0.360 | +0.063 | |||||
| 12S rRNA12S ribosomal RNA | 953 bp | 48.48% | −0.113 | +0.283 | |||||
| 16S rRNA16S ribosomal RNA | 1,688 bp | 41.29% | −0.113 | +0.296 | |||||
| D-loopControl region (D-loop) | 942 bp | 35.35% | −0.219 | −0.011 |
Codon usage
Counts per codon, darker is more frequent3,801 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU101
UUC129
Leu L16.3%
UUA131
UUG11
CUU91
CUC93
CUA279
CUG14
Ile I8.0%
AUU160
AUC145
Met M4.9%
AUA155
AUG31
Val V5.8%
GUU53
GUC40
GUA115
GUG14
Ser S6.2%
UCU30
UCC42
UCA113
UCG2
AGU16
AGC33
Pro P5.3%
CCU19
CCC40
CCA140
CCG3
Thr T8.1%
ACU28
ACC85
ACA192
ACG4
Ala A8.1%
GCU55
GCC110
GCA140
GCG3
Tyr Y3.3%
UAU56
UAC69
His H2.5%
CAU21
CAC75
Gln Q2.6%
CAA95
CAG2
Asn N3.5%
AAU42
AAC90
Lys K2.3%
AAA86
AAG3
Asp D2.1%
GAU17
GAC62
Glu E2.7%
GAA88
GAG15
Cys C0.7%
UGU5
UGC22
Trp W3.1%
UGA113
UGG6
Arg R1.9%
CGU10
CGC10
CGA48
CGG4
Gly G6.3%
GGU39
GGC46
GGA125
GGG29
Stop 0.2%
UAA5
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_025336.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (41.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,022 | 953 bp | + | 48.5% |
| tRNA-Val | Transfer RNA | 1,023 | 1,093 | 71 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,094 | 2,781 | 1,688 bp | + | 41.3% |
| tRNA-Leu (UUR) | Transfer RNA | 2,782 | 2,856 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,858 | 3,832 | 975 bp | + | 40.6% |
| tRNA-Ile | Transfer RNA | 3,837 | 3,908 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,907 | 3,976 | 70 bp | − | – |
| tRNA-Met | Transfer RNA | 3,979 | 4,047 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,048 | 5,092 | 1,045 bp | + | 40.3% |
| tRNA-Trp | Transfer RNA | 5,093 | 5,164 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,167 | 5,234 | 68 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,236 | 5,308 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,343 | 5,409 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,411 | 5,480 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,482 | 7,032 | 1,551 bp | + | 42.6% |
| tRNA-Ser (UCN) | Transfer RNA | 7,033 | 7,101 | 69 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,105 | 7,175 | 71 bp | + | – |
| COX2 | Protein-coding gene | 7,180 | 7,870 | 691 bp | + | 40.4% |
| tRNA-Lys | Transfer RNA | 7,871 | 7,945 | 75 bp | + | – |
| ATP8 | Protein-coding gene | 7,948 | 8,112 | 165 bp | + | 33.9% |
| ATP6 | Protein-coding gene | 8,106 | 8,785 | 680 bp | + | 39.1% |
| COX3 | Protein-coding gene | 8,786 | 9,570 | 785 bp | + | 44.3% |
| tRNA-Gly | Transfer RNA | 9,571 | 9,641 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,642 | 9,990 | 349 bp | + | 43.0% |
| tRNA-Arg | Transfer RNA | 9,991 | 10,060 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,061 | 10,357 | 297 bp | + | 45.1% |
| ND4 | Protein-coding gene | 10,351 | 11,731 | 1,381 bp | + | 39.5% |
| tRNA-His | Transfer RNA | 11,733 | 11,801 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,802 | 11,870 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,873 | 11,945 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,946 | 13,775 | 1,830 bp | + | 38.5% |
| ND6 | Protein-coding gene | 13,772 | 14,293 | 522 bp | − | 39.3% |
| tRNA-Glu | Transfer RNA | 14,294 | 14,362 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,369 | 15,509 | 1,141 bp | + | 41.6% |
| tRNA-Thr | Transfer RNA | 15,510 | 15,585 | 76 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,585 | 15,654 | 70 bp | − | – |
| D-loop | Control region | 15,655 | 16,596 | 942 bp | – | 35.4% |