Rastrelliger brachysoma
Short mackerel, or Indian mackerel
GC content
47.48%
Whole genome
Non-coding
931 bp
D-loop 845 bp
Where Short mackerel, or Indian mackerel sits among 2,335 species
Whole-genome GC content against maximum lifespan. Short mackerel, or Indian mackerel has the 2,133rd longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,539 bp
- GC skew (G − C) / (G + C)
- −0.292
- AT skew (A − T) / (A + T)
- +0.032
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,539 bp
Protein-coding11,403 bp
12S rRNA961 bp
16S rRNA1,711 bp
All tRNA1,537 bp
D-loop845 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 48.92% | −0.400 | −0.068 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 49.43% | −0.482 | +0.009 | |||||
| COX1Cytochrome c oxidase subunit I | 1,546 bp | 48.32% | −0.213 | −0.069 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 43.99% | −0.263 | −0.008 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 49.41% | −0.494 | +0.176 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 46.78% | −0.425 | −0.126 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 49.05% | −0.299 | −0.050 | |||||
| ND3NADH dehydrogenase subunit 3 | 350 bp | 52.57% | −0.402 | −0.229 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 52.86% | −0.427 | −0.086 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 49.31% | −0.380 | −0.029 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 47.69% | −0.421 | +0.023 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 48.08% | −0.378 | +0.506 | |||||
| CYTBCytochrome b | 1,141 bp | 48.55% | −0.361 | −0.046 | |||||
| 12S rRNA12S ribosomal RNA | 961 bp | 48.80% | −0.104 | +0.175 | |||||
| 16S rRNA16S ribosomal RNA | 1,711 bp | 45.82% | −0.110 | +0.230 | |||||
| D-loopControl region (D-loop) | 845 bp | 38.46% | −0.120 | −0.058 |
Codon usage
Counts per codon, darker is more frequent3,805 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU77
UUC152
Leu L17.5%
UUA41
UUG15
CUU185
CUC210
CUA163
CUG50
Ile I6.8%
AUU123
AUC134
Met M4.2%
AUA70
AUG89
Val V6.0%
GUU71
GUC74
GUA57
GUG25
Ser S6.3%
UCU49
UCC72
UCA53
UCG12
AGU7
AGC47
Pro P5.8%
CCU59
CCC103
CCA53
CCG7
Thr T8.1%
ACU59
ACC127
ACA111
ACG10
Ala A9.3%
GCU67
GCC153
GCA119
GCG15
Tyr Y2.9%
UAU27
UAC84
His H2.8%
CAU23
CAC85
Gln Q2.3%
CAA74
CAG15
Asn N3.1%
AAU26
AAC93
Lys K1.9%
AAA66
AAG6
Asp D2.0%
GAU15
GAC62
Glu E2.8%
GAA81
GAG24
Cys C0.7%
UGU11
UGC15
Trp W3.1%
UGA101
UGG18
Arg R2.0%
CGU14
CGC12
CGA43
CGG7
Gly G6.3%
GGU30
GGC96
GGA74
GGG38
Stop 0.2%
UAA5
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_013485.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (47.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| D-loop | Control region | 1 | 845 | 845 bp | – | 38.5% |
| tRNA-Phe | Transfer RNA | 846 | 913 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 910 | 1,870 | 961 bp | + | 48.8% |
| tRNA-Val | Transfer RNA | 1,871 | 1,942 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,943 | 3,653 | 1,711 bp | + | 45.8% |
| tRNA-Leu (CUN) | Transfer RNA | 3,654 | 3,727 | 74 bp | + | – |
| ND1 | Protein-coding gene | 3,728 | 4,702 | 975 bp | + | 48.9% |
| tRNA-Ile | Transfer RNA | 4,706 | 4,777 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 4,776 | 4,847 | 72 bp | − | – |
| tRNA-Met | Transfer RNA | 4,847 | 4,915 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,916 | 5,961 | 1,046 bp | + | 49.4% |
| tRNA-Trp | Transfer RNA | 5,962 | 6,033 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 6,039 | 6,106 | 68 bp | − | – |
| tRNA-Asn | Transfer RNA | 6,108 | 6,180 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 6,217 | 6,288 | 72 bp | − | – |
| tRNA-Tyr | Transfer RNA | 6,285 | 6,351 | 67 bp | − | – |
| COX1 | Protein-coding gene | 6,353 | 7,898 | 1,546 bp | + | 48.3% |
| tRNA-Ser (AGY) | Transfer RNA | 7,908 | 7,969 | 62 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,978 | 8,048 | 71 bp | + | – |
| COX2 | Protein-coding gene | 8,058 | 8,748 | 691 bp | + | 44.0% |
| tRNA-Lys | Transfer RNA | 8,749 | 8,822 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 8,825 | 8,992 | 168 bp | + | 49.4% |
| ATP6 | Protein-coding gene | 8,983 | 9,666 | 684 bp | + | 46.8% |
| COX3 | Protein-coding gene | 9,666 | 10,450 | 785 bp | + | 49.1% |
| tRNA-Gly | Transfer RNA | 10,451 | 10,522 | 72 bp | + | – |
| ND3 | Protein-coding gene | 10,523 | 10,872 | 350 bp | + | 52.6% |
| tRNA-Arg | Transfer RNA | 10,873 | 10,940 | 68 bp | + | – |
| ND4L | Protein-coding gene | 10,941 | 11,237 | 297 bp | + | 52.9% |
| ND4 | Protein-coding gene | 11,231 | 12,611 | 1,381 bp | + | 49.3% |
| tRNA-His | Transfer RNA | 12,612 | 12,692 | 81 bp | + | – |
| tRNA-Ser (UCN) | Transfer RNA | 12,683 | 12,750 | 68 bp | + | – |
| tRNA-Leu (UUR) | Transfer RNA | 12,755 | 12,827 | 73 bp | + | – |
| ND5 | Protein-coding gene | 12,829 | 14,667 | 1,839 bp | + | 47.7% |
| ND6 | Protein-coding gene | 14,664 | 15,185 | 522 bp | − | 48.1% |
| tRNA-Glu | Transfer RNA | 15,187 | 15,254 | 68 bp | − | – |
| CYTB | Protein-coding gene | 15,260 | 16,400 | 1,141 bp | + | 48.6% |
| tRNA-Thr | Transfer RNA | 16,401 | 16,472 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 16,474 | 16,539 | 66 bp | − | – |