MitoAge

Rattus lutreola

Australian swamp rat

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Maximum lifespan
4.4 yr
AnAge record
mtDNA size
16,295 bp
RefSeq NC_014858.1
GC content
39.12%
Whole genome
Non-coding
940 bp
D-loop 875 bp

Where Australian swamp rat sits among 2,335 species

Whole-genome GC content against maximum lifespan. Australian swamp rat has the 2,067th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Australian swamp rat
  • This species
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Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,295 bp
GC skew (G − C) / (G + C)
−0.361
AT skew (A − T) / (A + T)
+0.113

Life history

Maximum lifespan
4.4 years
Adult weight
115 g
Birth weight
4.9 g
Basal metabolic rate
0.353 W
Body temperature
36.7 °C
Female sexual maturity
79 days
Gestation or incubation
27 days
Litter or clutch size
5
Litters per year
2.5
Postnatal growth rate
0.0277 per day

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 03082)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, small sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Renamed in build 2
In the database since
build 1 (2015-07-01)
Last changed
build 2 (2026-11-13)
Earlier name
Rattus lutreolus

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,295 bp
Protein-coding11,333 bp
12S rRNA962 bp
16S rRNA1,565 bp
All tRNA1,498 bp
D-loop875 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1955 bp31.0%28.5%10.7%29.8%40.52%−0.473+0.042
ND2NADH dehydrogenase subunit 21,036 bp35.7%25.1%8.6%30.6%39.19%−0.562+0.175
COX1Cytochrome c oxidase subunit I1,545 bp28.7%30.2%15.8%25.4%41.17%−0.233−0.025
COX2Cytochrome c oxidase subunit II684 bp32.9%26.5%13.3%27.3%40.64%−0.345+0.108
ATP8ATP synthase F0 subunit 8204 bp36.8%28.4%6.4%28.4%34.80%−0.634+0.128
ATP6ATP synthase F0 subunit 6681 bp32.9%28.3%10.4%28.3%38.77%−0.462+0.074
COX3Cytochrome c oxidase subunit III784 bp30.0%28.4%13.5%28.1%41.58%−0.350+0.026
ND3NADH dehydrogenase subunit 3348 bp33.3%31.0%10.1%25.6%35.63%−0.435+0.036
ND4LNADH dehydrogenase subunit 4L297 bp29.3%27.9%11.4%31.3%42.76%−0.465+0.024
ND4NADH dehydrogenase subunit 41,378 bp33.6%27.2%10.3%28.9%39.19%−0.474+0.105
ND5NADH dehydrogenase subunit 51,833 bp33.6%27.0%10.3%29.2%39.44%−0.480+0.108
ND6NADH dehydrogenase subunit 6517 bp43.7%16.8%7.0%32.5%39.46%−0.647+0.444
CYTBCytochrome b1,143 bp30.3%27.5%12.2%30.0%42.26%−0.420+0.048
12S rRNA12S ribosomal RNA962 bp37.5%24.0%16.3%22.1%38.46%−0.151+0.220
16S rRNA16S ribosomal RNA1,565 bp38.6%24.2%16.6%20.6%37.25%−0.108+0.230
D-loopControl region (D-loop)875 bp33.4%29.4%11.9%25.4%37.26%−0.362+0.064

Codon usage

Counts per codon, darker is more frequent

3,800 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.2%
UUU99
UUC138
Leu L15.6%
UUA114
UUG20
CUU74
CUC99
CUA260
CUG26
Ile I9.7%
AUU187
AUC182
Met M5.9%
AUA180
AUG44
Val V4.2%
GUU43
GUC28
GUA83
GUG5
Ser S7.9%
UCU38
UCC79
UCA123
UCG5
AGU13
AGC43
Pro P5.2%
CCU47
CCC53
CCA95
CCG2
Thr T8.5%
ACU47
ACC97
ACA175
ACG4
Ala A6.3%
GCU46
GCC107
GCA79
GCG8
Tyr Y3.4%
UAU46
UAC83
His H2.6%
CAU36
CAC62
Gln Q2.2%
CAA79
CAG6
Asn N4.3%
AAU46
AAC119
Lys K2.6%
AAA90
AAG7
Asp D1.8%
GAU18
GAC52
Glu E2.5%
GAA81
GAG13
Cys C0.8%
UGU8
UGC21
Trp W2.8%
UGA92
UGG13
Arg R1.7%
CGU8
CGC14
CGA40
CGG3
Gly G5.6%
GGU24
GGC60
GGA103
GGG25
Stop 0.2%
UAA8
UAG0
AGA0
AGG0

Genome map

38 annotated features in NC_014858.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (39.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16969 bp+–
12S rRNARibosomal RNA701,031962 bp+38.5%
tRNA-ValTransfer RNA1,0321,09968 bp+–
16S rRNARibosomal RNA1,1002,6641,565 bp+37.3%
tRNA-Leu (UUR)Transfer RNA2,6652,73975 bp+–
ND1Protein-coding gene2,7403,694955 bp+40.5%
tRNA-IleTransfer RNA3,6953,76369 bp+–
tRNA-GlnTransfer RNA3,7613,83171 bp−–
tRNA-MetTransfer RNA3,8353,90369 bp+–
ND2Protein-coding gene3,9044,9391,036 bp+39.2%
tRNA-TrpTransfer RNA4,9405,00869 bp+–
tRNA-AlaTransfer RNA5,0115,07969 bp−–
tRNA-AsnTransfer RNA5,0825,15372 bp−–
tRNA-CysTransfer RNA5,1855,25167 bp−–
tRNA-TyrTransfer RNA5,2555,32066 bp−–
COX1Protein-coding gene5,3226,8661,545 bp+41.2%
tRNA-Ser (UCN)Transfer RNA6,8646,93269 bp−–
tRNA-AspTransfer RNA6,9367,00368 bp+–
COX2Protein-coding gene7,0057,688684 bp+40.6%
tRNA-LysTransfer RNA7,6927,75564 bp+–
ATP8Protein-coding gene7,7577,960204 bp+34.8%
ATP6Protein-coding gene7,9188,598681 bp+38.8%
COX3Protein-coding gene8,5989,381784 bp+41.6%
tRNA-GlyTransfer RNA9,3829,44968 bp+–
ND3Protein-coding gene9,4509,797348 bp+35.6%
tRNA-ArgTransfer RNA9,7999,86668 bp+–
ND4LProtein-coding gene9,86910,165297 bp+42.8%
ND4Protein-coding gene10,15911,5361,378 bp+39.2%
tRNA-HisTransfer RNA11,53711,60468 bp+–
tRNA-Ser (AGY)Transfer RNA11,60511,66359 bp+–
tRNA-Leu (CUN)Transfer RNA11,66311,73371 bp+–
ND5Protein-coding gene11,73413,5661,833 bp+39.4%
ND6Protein-coding gene13,54614,062517 bp−39.5%
tRNA-GluTransfer RNA14,06314,13169 bp−–
CYTBProtein-coding gene14,13715,2791,143 bp+42.3%
tRNA-ThrTransfer RNA15,28215,34867 bp+–
tRNA-ProTransfer RNA15,35415,42067 bp−–
D-loopControl region15,42116,295875 bp–37.3%

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