Recurvirostra avosetta
Pied avocet
GC content
44.69%
Whole genome
Non-coding
1,424 bp
D-loop 1,333 bp
Where Pied avocet sits among 2,335 species
Whole-genome GC content against maximum lifespan. Pied avocet has the 529th longest lifespan of them.
- This species
- Other birds
- Other classes
Base composition
Whole genome16,897 bp
- GC skew (G − C) / (G + C)
- −0.393
- AT skew (A − T) / (A + T)
- +0.147
Life history
- Maximum lifespan
- 27.8 years
- Adult weight
- 304 g
- Female sexual maturity
- 2 years
- Male sexual maturity
- 2 years
- Postnatal growth rate
- 0.192 per day
Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 00509)
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Updated in build 2
- In the database since
- build 1 (2015-07-01)
- Last changed
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,897 bp
Protein-coding11,376 bp
12S rRNA967 bp
16S rRNA1,596 bp
All tRNA1,547 bp
D-loop1,333 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 978 bp | 44.27% | −0.441 | +0.050 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,039 bp | 42.35% | −0.577 | +0.169 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 46.94% | −0.330 | +0.060 | |||||
| COX2Cytochrome c oxidase subunit II | 684 bp | 44.59% | −0.377 | +0.145 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 42.26% | −0.690 | +0.237 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 46.05% | −0.549 | +0.106 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 46.81% | −0.357 | +0.113 | |||||
| ND3NADH dehydrogenase subunit 3 | 351 bp | 46.15% | −0.469 | +0.079 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 45.46% | −0.437 | +0.086 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,378 bp | 45.21% | −0.570 | +0.174 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,815 bp | 44.57% | −0.523 | +0.177 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 45.79% | −0.590 | +0.548 | |||||
| CYTBCytochrome b | 1,143 bp | 46.63% | −0.475 | +0.089 | |||||
| 12S rRNA12S ribosomal RNA | 967 bp | 47.78% | −0.147 | +0.204 | |||||
| 16S rRNA16S ribosomal RNA | 1,596 bp | 44.24% | −0.164 | +0.245 | |||||
| D-loopControl region (D-loop) | 1,333 bp | 40.89% | −0.295 | +0.061 |
Codon usage
Counts per codon, darker is more frequent3,797 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU53
UUC173
Leu L17.1%
UUA85
UUG21
CUU52
CUC129
CUA333
CUG30
Ile I7.6%
AUU71
AUC218
Met M4.5%
AUA143
AUG28
Val V4.4%
GUU26
GUC50
GUA79
GUG13
Ser S7.7%
UCU33
UCC101
UCA100
UCG3
AGU6
AGC49
Pro P5.7%
CCU24
CCC73
CCA115
CCG6
Thr T9.4%
ACU54
ACC151
ACA145
ACG6
Ala A7.6%
GCU45
GCC133
GCA103
GCG8
Tyr Y3.0%
UAU26
UAC89
His H2.9%
CAU27
CAC85
Gln Q2.5%
CAA88
CAG8
Asn N3.7%
AAU20
AAC119
Lys K2.3%
AAA86
AAG2
Asp D1.6%
GAU9
GAC52
Glu E2.5%
GAA85
GAG9
Cys C0.7%
UGU5
UGC23
Trp W2.8%
UGA95
UGG12
Arg R1.8%
CGU6
CGC15
CGA43
CGG5
Gly G5.8%
GGU37
GGC70
GGA86
GGG26
Stop 0.3%
UAA7
UAG1
AGA0
AGG2
Genome map
38 annotated features in NC_027420.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (44.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,036 | 967 bp | + | 47.8% |
| tRNA-Val | Transfer RNA | 1,037 | 1,108 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,108 | 2,703 | 1,596 bp | + | 44.2% |
| tRNA-Leu (UUR) | Transfer RNA | 2,703 | 2,776 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,782 | 3,759 | 978 bp | + | 44.3% |
| tRNA-Ile | Transfer RNA | 3,758 | 3,830 | 73 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,840 | 3,910 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,910 | 3,978 | 69 bp | + | – |
| ND2 | Protein-coding gene | 3,979 | 5,017 | 1,039 bp | + | 42.4% |
| tRNA-Trp | Transfer RNA | 5,018 | 5,087 | 70 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,089 | 5,157 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,160 | 5,233 | 74 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,236 | 5,302 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,302 | 5,372 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,374 | 6,924 | 1,551 bp | + | 46.9% |
| tRNA-Ser (UCN) | Transfer RNA | 6,916 | 6,989 | 74 bp | − | – |
| tRNA-Asp | Transfer RNA | 6,992 | 7,060 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,062 | 7,745 | 684 bp | + | 44.6% |
| tRNA-Lys | Transfer RNA | 7,747 | 7,816 | 70 bp | + | – |
| ATP8 | Protein-coding gene | 7,818 | 7,985 | 168 bp | + | 42.3% |
| ATP6 | Protein-coding gene | 7,976 | 8,659 | 684 bp | + | 46.1% |
| COX3 | Protein-coding gene | 8,659 | 9,442 | 784 bp | + | 46.8% |
| tRNA-Gly | Transfer RNA | 9,443 | 9,511 | 69 bp | + | – |
| ND3 | Protein-coding gene | 9,512 | 9,863 | 352 bp | + | 46.2% |
| tRNA-Arg | Transfer RNA | 9,866 | 9,934 | 69 bp | + | – |
| ND4L | Protein-coding gene | 9,936 | 10,232 | 297 bp | + | 45.5% |
| ND4 | Protein-coding gene | 10,226 | 11,603 | 1,378 bp | + | 45.2% |
| tRNA-His | Transfer RNA | 11,604 | 11,672 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,673 | 11,738 | 66 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,739 | 11,809 | 71 bp | + | – |
| ND5 | Protein-coding gene | 11,810 | 13,624 | 1,815 bp | + | 44.6% |
| CYTB | Protein-coding gene | 13,638 | 14,780 | 1,143 bp | + | 46.6% |
| tRNA-Thr | Transfer RNA | 14,785 | 14,854 | 70 bp | + | – |
| tRNA-Pro | Transfer RNA | 14,869 | 14,938 | 70 bp | − | – |
| ND6 | Protein-coding gene | 14,967 | 15,488 | 522 bp | − | 45.8% |
| tRNA-Glu | Transfer RNA | 15,492 | 15,564 | 73 bp | − | – |
| D-loop | Control region | 15,565 | 16,897 | 1,333 bp | – | 40.9% |