Rhinichthys cataractae

Longnose dace

Maximum lifespan

5 yr

AnAge record

mtDNA size

16,655 bp

RefSeq NC_033944.1

GC content

45.53%

Whole genome

Non-coding

1,044 bp

D-loop 983 bp

Where Longnose dace sits among 2,335 species

Whole-genome GC content against maximum lifespan. Longnose dace has the 2,041st longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,655 bp

GC skew (G − C) / (G + C): −0.182
AT skew (A − T) / (A + T): +0.030

Life history

Maximum lifespan: 5 years
Female sexual maturity: 3 years
Male sexual maturity: 3 years

Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 03980)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: New in build 2
In the database since: build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,655 bp

Protein-coding11,403 bp

12S rRNA958 bp

16S rRNA1,688 bp

All tRNA1,562 bp

D-loop983 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Rhinichthys cataractae genes

ND1NADH dehydrogenase subunit 1	975 bp	23.8%	28.2%	18.9%	29.1%	48.00%	−0.214	−0.085
ND2NADH dehydrogenase subunit 2	1,045 bp	25.6%	26.0%	18.0%	30.4%	48.42%	−0.257	−0.009
COX1Cytochrome c oxidase subunit I	1,551 bp	24.9%	29.7%	18.9%	26.6%	45.46%	−0.169	−0.087
COX2Cytochrome c oxidase subunit II	691 bp	30.4%	28.2%	16.5%	24.9%	41.39%	−0.203	+0.037
ATP8ATP synthase F0 subunit 8	165 bp	34.5%	22.4%	13.3%	29.7%	43.03%	−0.380	+0.213
ATP6ATP synthase F0 subunit 6	683 bp	26.5%	30.6%	16.4%	26.5%	42.90%	−0.235	−0.072
COX3Cytochrome c oxidase subunit III	784 bp	25.4%	28.6%	18.5%	27.6%	46.05%	−0.197	−0.059
ND3NADH dehydrogenase subunit 3	349 bp	23.5%	28.4%	18.9%	29.2%	48.14%	−0.214	−0.094
ND4LNADH dehydrogenase subunit 4L	297 bp	25.3%	29.0%	17.2%	28.6%	45.79%	−0.250	−0.068
ND4NADH dehydrogenase subunit 4	1,382 bp	25.8%	28.1%	18.2%	27.8%	46.02%	−0.208	−0.043
ND5NADH dehydrogenase subunit 5	1,836 bp	28.3%	27.5%	16.2%	28.0%	44.23%	−0.266	+0.016
ND6NADH dehydrogenase subunit 6	522 bp	34.7%	14.4%	16.5%	34.5%	50.96%	−0.353	+0.414
CYTBCytochrome b	1,141 bp	25.4%	29.5%	17.8%	27.3%	45.05%	−0.210	−0.075
12S rRNA12S ribosomal RNA	958 bp	30.4%	19.2%	23.7%	26.7%	50.42%	−0.060	+0.225
16S rRNA16S ribosomal RNA	1,688 bp	33.3%	20.8%	22.4%	23.5%	45.91%	−0.025	+0.231
D-loopControl region (D-loop)	983 bp	32.5%	31.3%	14.1%	22.1%	36.22%	−0.219	+0.018

Codon usage

Counts per codon, darker is more frequent

Gene

3,804 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.0%

UUU110

UUC117

Leu L16.4%

UUA96

UUG41

CUU133

CUC92

CUA180

CUG80

Ile I6.8%

AUU169

AUC90

Met M4.7%

AUA105

AUG73

Val V6.5%

GUU72

GUC46

GUA88

GUG43

Ser S6.4%

UCU38

UCC64

UCA66

UCG19

AGU10

AGC46

Pro P5.6%

CCU42

CCC56

CCA90

CCG24

Thr T7.9%

ACU57

ACC96

ACA119

ACG27

Ala A9.4%

GCU54

GCC155

GCA114

GCG35

Tyr Y3.0%

UAU64

UAC49

His H2.7%

CAU29

CAC74

Gln Q2.5%

CAA67

CAG30

Asn N2.9%

AAU54

AAC56

Lys K2.0%

AAA57

AAG20

Asp D2.1%

GAU22

GAC56

Glu E2.7%

GAA69

GAG33

Cys C0.7%

UGU15

UGC11

Trp W3.2%

UGA87

UGG33

Arg R2.1%

CGU12

CGC10

CGA37

CGG19

Gly G6.5%

GGU29

GGC65

GGA85

GGG68

Stop 0.2%

UAA4

UAG2

AGA0

AGG0

Genome map

38 annotated features in NC_033944.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (45.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Rhinichthys cataractae (NC_033944.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	69	69 bp	+	–
12S rRNA	Ribosomal RNA	70	1,027	958 bp	+	50.4%
tRNA-Val	Transfer RNA	1,028	1,099	72 bp	+	–
16S rRNA	Ribosomal RNA	1,100	2,787	1,688 bp	+	45.9%
tRNA-Leu (UUR)	Transfer RNA	2,788	2,863	76 bp	+	–
ND1	Protein-coding gene	2,865	3,839	975 bp	+	48.0%
tRNA-Ile	Transfer RNA	3,844	3,915	72 bp	+	–
tRNA-Gln	Transfer RNA	3,914	3,984	71 bp	−	–
tRNA-Met	Transfer RNA	3,986	4,054	69 bp	+	–
ND2	Protein-coding gene	4,055	5,099	1,045 bp	+	48.4%
tRNA-Trp	Transfer RNA	5,100	5,170	71 bp	+	–
tRNA-Ala	Transfer RNA	5,172	5,240	69 bp	−	–
tRNA-Asn	Transfer RNA	5,242	5,314	73 bp	−	–
tRNA-Cys	Transfer RNA	5,346	5,413	68 bp	−	–
tRNA-Tyr	Transfer RNA	5,415	5,485	71 bp	−	–
COX1	Protein-coding gene	5,487	7,037	1,551 bp	+	45.5%
tRNA-Ser (UCN)	Transfer RNA	7,038	7,108	71 bp	−	–
tRNA-Asp	Transfer RNA	7,112	7,185	74 bp	+	–
COX2	Protein-coding gene	7,197	7,887	691 bp	+	41.4%
tRNA-Lys	Transfer RNA	7,888	7,963	76 bp	+	–
ATP8	Protein-coding gene	7,965	8,129	165 bp	+	43.0%
ATP6	Protein-coding gene	8,123	8,805	683 bp	+	42.9%
COX3	Protein-coding gene	8,806	9,589	784 bp	+	46.1%
tRNA-Gly	Transfer RNA	9,590	9,661	72 bp	+	–
ND3	Protein-coding gene	9,662	10,010	349 bp	+	48.1%
tRNA-Arg	Transfer RNA	10,011	10,079	69 bp	+	–
ND4L	Protein-coding gene	10,080	10,376	297 bp	+	45.8%
ND4	Protein-coding gene	10,370	11,751	1,382 bp	+	46.0%
tRNA-His	Transfer RNA	11,752	11,820	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,821	11,889	69 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,891	11,963	73 bp	+	–
ND5	Protein-coding gene	11,964	13,799	1,836 bp	+	44.2%
ND6	Protein-coding gene	13,796	14,317	522 bp	−	51.0%
tRNA-Glu	Transfer RNA	14,318	14,386	69 bp	−	–
CYTB	Protein-coding gene	14,391	15,531	1,141 bp	+	45.1%
tRNA-Thr	Transfer RNA	15,532	15,603	72 bp	+	–
tRNA-Pro	Transfer RNA	15,603	15,672	70 bp	−	–
D-loop	Control region	15,673	16,655	983 bp	–	36.2%