Rhinogobius cliffordpopei
GC content
49.22%
Whole genome
Non-coding
902 bp
D-loop 185 bp
Where Rhinogobius cliffordpopei sits among 2,335 species
Whole-genome GC content against maximum lifespan. Rhinogobius cliffordpopei has the 2,296th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,525 bp
- GC skew (G − C) / (G + C)
- −0.276
- AT skew (A − T) / (A + T)
- +0.012
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- questionable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,525 bp
Protein-coding11,411 bp
12S rRNA952 bp
16S rRNA1,705 bp
All tRNA1,555 bp
D-loop185 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 52.62% | −0.376 | −0.069 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,048 bp | 52.00% | −0.428 | −0.089 | |||||
| COX1Cytochrome c oxidase subunit I | 1,554 bp | 50.32% | −0.184 | −0.127 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 48.34% | −0.252 | +0.031 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 47.88% | −0.468 | +0.093 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 50.29% | −0.372 | −0.118 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 50.00% | −0.265 | −0.056 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 54.16% | −0.397 | −0.213 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 52.86% | −0.401 | −0.171 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 53.22% | −0.328 | −0.118 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 47.53% | −0.362 | −0.013 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 51.92% | −0.461 | +0.474 | |||||
| CYTBCytochrome b | 1,141 bp | 49.17% | −0.337 | −0.110 | |||||
| 12S rRNA12S ribosomal RNA | 952 bp | 47.27% | −0.111 | +0.227 | |||||
| 16S rRNA16S ribosomal RNA | 1,705 bp | 47.74% | −0.150 | +0.241 | |||||
| D-loopControl region (D-loop) | 185 bp | 29.19% | −0.296 | +0.084 |
Codon usage
Counts per codon, darker is more frequent3,808 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.3%
UUU106
UUC132
Leu L17.7%
UUA63
UUG21
CUU164
CUC214
CUA145
CUG68
Ile I6.7%
AUU147
AUC108
Met M3.9%
AUA68
AUG80
Val V5.8%
GUU53
GUC71
GUA65
GUG33
Ser S6.1%
UCU36
UCC86
UCA47
UCG12
AGU7
AGC45
Pro P6.0%
CCU49
CCC123
CCA42
CCG16
Thr T8.0%
ACU43
ACC133
ACA102
ACG25
Ala A9.3%
GCU68
GCC173
GCA104
GCG11
Tyr Y2.9%
UAU30
UAC79
His H2.8%
CAU17
CAC89
Gln Q2.6%
CAA77
CAG22
Asn N3.2%
AAU25
AAC95
Lys K1.7%
AAA50
AAG16
Asp D2.0%
GAU18
GAC59
Glu E2.5%
GAA61
GAG34
Cys C0.7%
UGU10
UGC17
Trp W3.0%
UGA0
UGG116
Arg R2.0%
CGU5
CGC22
CGA36
CGG13
Gly G6.6%
GGU17
GGC111
GGA64
GGG58
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_029252.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (49.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,020 | 952 bp | + | 47.3% |
| tRNA-Val | Transfer RNA | 1,021 | 1,092 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,093 | 2,797 | 1,705 bp | + | 47.7% |
| tRNA-Leu (UUR) | Transfer RNA | 2,798 | 2,872 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,873 | 3,847 | 975 bp | + | 52.6% |
| tRNA-Ile | Transfer RNA | 3,852 | 3,921 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,921 | 3,991 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,991 | 4,059 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,060 | 5,107 | 1,048 bp | + | 52.0% |
| tRNA-Trp | Transfer RNA | 5,108 | 5,178 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,181 | 5,249 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,251 | 5,323 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,356 | 5,421 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,422 | 5,491 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,493 | 7,046 | 1,554 bp | + | 50.3% |
| tRNA-Ser (UCN) | Transfer RNA | 7,047 | 7,118 | 72 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,122 | 7,193 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,197 | 7,887 | 691 bp | + | 48.3% |
| tRNA-Lys | Transfer RNA | 7,888 | 7,963 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,965 | 8,129 | 165 bp | + | 47.9% |
| ATP6 | Protein-coding gene | 8,123 | 8,806 | 684 bp | + | 50.3% |
| COX3 | Protein-coding gene | 8,806 | 9,589 | 784 bp | + | 50.0% |
| tRNA-Gly | Transfer RNA | 9,590 | 9,661 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,662 | 10,010 | 349 bp | + | 54.2% |
| tRNA-Arg | Transfer RNA | 10,011 | 10,079 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,080 | 10,376 | 297 bp | + | 52.9% |
| ND4 | Protein-coding gene | 10,370 | 11,750 | 1,381 bp | + | 53.2% |
| tRNA-His | Transfer RNA | 11,751 | 11,819 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,820 | 11,887 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,892 | 11,964 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,965 | 13,803 | 1,839 bp | + | 47.5% |
| ND6 | Protein-coding gene | 13,800 | 14,321 | 522 bp | − | 51.9% |
| tRNA-Glu | Transfer RNA | 14,322 | 14,392 | 71 bp | − | – |
| CYTB | Protein-coding gene | 14,399 | 15,539 | 1,141 bp | + | 49.2% |
| tRNA-Thr | Transfer RNA | 15,540 | 15,611 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,605 | 15,680 | 76 bp | − | – |
| D-loop | Control region | 15,681 | 15,865 | 185 bp | – | 29.2% |