MitoAge

Rhinolophus ferrumequinum

Greater horseshoe bat

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Maximum lifespan
30.5 yr
AnAge record
mtDNA size
16,870 bp
RefSeq NC_020326.1
GC content
42.80%
Whole genome
Non-coding
1,489 bp
D-loop 1,322 bp

Where Greater horseshoe bat sits among 2,335 species

Whole-genome GC content against maximum lifespan. Greater horseshoe bat has the 430th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Greater horseshoe bat
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,870 bp
GC skew (G − C) / (G + C)
−0.345
AT skew (A − T) / (A + T)
+0.112

Life history

Maximum lifespan
30.5 years
Adult weight
22.9 g
Birth weight
5.8 g
Female sexual maturity
2 years
Male sexual maturity
2 years
Gestation or incubation
80 days
Litter or clutch size
1
Litters per year
1

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02378)

About this record

Lifespan source
AnAge build 15
Based on
an animal in the wild
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,870 bp
Protein-coding11,340 bp
12S rRNA968 bp
16S rRNA1,564 bp
All tRNA1,511 bp
D-loop1,322 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1956 bp29.7%25.4%11.7%33.2%44.87%−0.478+0.078
ND2NADH dehydrogenase subunit 21,042 bp34.0%23.9%8.9%33.2%42.13%−0.576+0.174
COX1Cytochrome c oxidase subunit I1,545 bp26.3%28.1%17.4%28.2%45.63%−0.237−0.033
COX2Cytochrome c oxidase subunit II684 bp31.0%25.0%14.5%29.5%44.01%−0.342+0.107
ATP8ATP synthase F0 subunit 8204 bp36.3%25.5%8.8%29.4%38.24%−0.538+0.175
ATP6ATP synthase F0 subunit 6681 bp28.3%28.3%12.5%30.8%43.32%−0.4240.000
COX3Cytochrome c oxidase subunit III784 bp25.5%27.4%15.7%31.4%47.07%−0.333−0.036
ND3NADH dehydrogenase subunit 3348 bp31.6%26.4%10.6%31.3%41.95%−0.493+0.089
ND4LNADH dehydrogenase subunit 4L297 bp31.6%30.3%13.5%24.6%38.05%−0.292+0.022
ND4NADH dehydrogenase subunit 41,378 bp31.1%26.6%11.1%31.3%42.38%−0.476+0.078
ND5NADH dehydrogenase subunit 51,821 bp31.0%25.3%11.7%32.0%43.66%−0.464+0.101
ND6NADH dehydrogenase subunit 6528 bp42.4%19.1%6.4%32.0%38.45%−0.665+0.378
CYTBCytochrome b1,140 bp27.8%26.2%14.3%31.7%45.97%−0.378+0.029
12S rRNA12S ribosomal RNA968 bp35.6%20.9%18.8%24.7%43.49%−0.135+0.261
16S rRNA16S ribosomal RNA1,564 bp36.3%23.0%17.4%23.3%40.73%−0.146+0.223
D-loopControl region (D-loop)1,322 bp32.6%23.9%16.6%26.9%43.50%−0.235+0.154

Codon usage

Counts per codon, darker is more frequent

3,801 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.2%
UUU74
UUC160
Leu L16.3%
UUA61
UUG15
CUU60
CUC125
CUA298
CUG61
Ile I8.4%
AUU141
AUC180
Met M5.8%
AUA172
AUG50
Val V5.4%
GUU43
GUC58
GUA86
GUG20
Ser S7.7%
UCU48
UCC91
UCA86
UCG6
AGU21
AGC40
Pro P5.2%
CCU38
CCC79
CCA76
CCG3
Thr T8.6%
ACU45
ACC132
ACA137
ACG11
Ala A6.4%
GCU41
GCC132
GCA63
GCG7
Tyr Y3.3%
UAU50
UAC75
His H2.8%
CAU20
CAC85
Gln Q2.3%
CAA74
CAG14
Asn N3.8%
AAU43
AAC101
Lys K2.5%
AAA80
AAG15
Asp D1.8%
GAU18
GAC51
Glu E2.5%
GAA68
GAG26
Cys C0.6%
UGU5
UGC18
Trp W2.8%
UGA101
UGG6
Arg R1.7%
CGU8
CGC16
CGA36
CGG4
Gly G5.7%
GGU22
GGC72
GGA93
GGG31
Stop 0.2%
UAA8
UAG0
AGA1
AGG0

Genome map

38 annotated features in NC_020326.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (42.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA17070 bp+–
12S rRNARibosomal RNA711,038968 bp+43.5%
tRNA-ValTransfer RNA1,0391,10668 bp+–
16S rRNARibosomal RNA1,1082,6711,564 bp+40.7%
tRNA-Leu (UUR)Transfer RNA2,6732,74775 bp+–
ND1Protein-coding gene2,7503,705956 bp+44.9%
tRNA-IleTransfer RNA3,7063,77469 bp+–
tRNA-GlnTransfer RNA3,7723,84473 bp−–
tRNA-MetTransfer RNA3,8463,91469 bp+–
ND2Protein-coding gene3,9154,9561,042 bp+42.1%
tRNA-TrpTransfer RNA4,9575,02670 bp+–
tRNA-AlaTransfer RNA5,0315,09969 bp−–
tRNA-AsnTransfer RNA5,1005,17273 bp−–
tRNA-CysTransfer RNA5,2065,27368 bp−–
tRNA-TyrTransfer RNA5,2745,34067 bp−–
COX1Protein-coding gene5,3426,8861,545 bp+45.6%
tRNA-Ser (UCN)Transfer RNA6,8856,95268 bp−–
tRNA-AspTransfer RNA6,9607,02566 bp+–
COX2Protein-coding gene7,0277,710684 bp+44.0%
tRNA-LysTransfer RNA7,7147,78067 bp+–
ATP8Protein-coding gene7,7827,985204 bp+38.2%
ATP6Protein-coding gene7,9438,623681 bp+43.3%
COX3Protein-coding gene8,6239,406784 bp+47.1%
tRNA-GlyTransfer RNA9,4079,47569 bp+–
ND3Protein-coding gene9,4769,823348 bp+42.0%
tRNA-ArgTransfer RNA9,8249,89168 bp+–
ND4LProtein-coding gene9,89210,188297 bp+38.1%
ND4Protein-coding gene10,18211,5591,378 bp+42.4%
tRNA-HisTransfer RNA11,56011,62869 bp+–
tRNA-Ser (AGY)Transfer RNA11,62911,68961 bp+–
tRNA-Leu (CUN)Transfer RNA11,69111,76070 bp+–
ND5Protein-coding gene11,76113,5811,821 bp+43.7%
ND6Protein-coding gene13,56514,092528 bp−38.5%
tRNA-GluTransfer RNA14,09314,16169 bp−–
CYTBProtein-coding gene14,16615,3051,140 bp+46.0%
tRNA-ThrTransfer RNA15,30615,37570 bp+–
tRNA-ProTransfer RNA15,37515,44167 bp−–
D-loopControl region15,54916,8701,322 bp–43.5%

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