MitoAge

Rhynchocyon chrysopygus

Golden-rumped elephant shrew

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Maximum lifespan
11 yr
AnAge record
mtDNA size
16,883 bp
RefSeq NC_073534.1
GC content
37.44%
Whole genome
Non-coding
1,513 bp
D-loop 1,451 bp

Where Golden-rumped elephant shrew sits among 2,335 species

Whole-genome GC content against maximum lifespan. Golden-rumped elephant shrew has the 1,519th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Golden-rumped elephant shrew
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,883 bp
GC skew (G − C) / (G + C)
−0.314
AT skew (A − T) / (A + T)
+0.051

Life history

Maximum lifespan
11 years
Adult weight
540 g
Birth weight
80 g
Female sexual maturity
38 days
Gestation or incubation
42 days
Litter or clutch size
1
Litters per year
4.5

Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 02619)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, small sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
New in build 2
In the database since
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,883 bp
Protein-coding11,336 bp
12S rRNA949 bp
16S rRNA1,559 bp
All tRNA1,526 bp
D-loop1,451 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1955 bp31.9%31.9%10.9%25.2%36.13%−0.3970.000
ND2NADH dehydrogenase subunit 21,044 bp35.2%29.4%8.3%27.1%35.44%−0.530+0.089
COX1Cytochrome c oxidase subunit I1,542 bp29.4%31.8%15.4%23.3%38.72%−0.203−0.039
COX2Cytochrome c oxidase subunit II681 bp32.2%30.2%12.6%25.0%37.59%−0.328+0.031
ATP8ATP synthase F0 subunit 8192 bp40.6%31.8%5.2%22.4%27.60%−0.623+0.122
ATP6ATP synthase F0 subunit 6681 bp31.7%32.3%10.1%25.8%35.98%−0.437−0.009
COX3Cytochrome c oxidase subunit III784 bp28.8%31.6%13.8%25.8%39.54%−0.303−0.046
ND3NADH dehydrogenase subunit 3346 bp32.7%32.1%10.7%24.6%35.26%−0.393+0.009
ND4LNADH dehydrogenase subunit 4L297 bp31.0%34.0%9.8%25.3%35.02%−0.442−0.047
ND4NADH dehydrogenase subunit 41,378 bp32.1%31.4%9.4%27.0%36.43%−0.482+0.011
ND5NADH dehydrogenase subunit 51,812 bp32.8%29.4%10.5%27.3%37.80%−0.445+0.056
ND6NADH dehydrogenase subunit 6528 bp41.9%21.0%7.0%30.1%37.12%−0.622+0.331
CYTBCytochrome b1,139 bp28.8%31.3%12.7%27.2%39.95%−0.363−0.041
12S rRNA12S ribosomal RNA949 bp36.5%24.1%17.9%21.5%39.41%−0.091+0.203
16S rRNA16S ribosomal RNA1,559 bp37.1%25.7%17.3%19.9%37.20%−0.069+0.181
D-loopControl region (D-loop)1,451 bp30.0%30.7%15.1%24.3%39.35%−0.233−0.011

Codon usage

Counts per codon, darker is more frequent

3,791 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.5%
UUU120
UUC126
Leu L16.4%
UUA151
UUG11
CUU108
CUC85
CUA251
CUG17
Ile I9.5%
AUU199
AUC162
Met M6.1%
AUA194
AUG36
Val V4.2%
GUU51
GUC32
GUA74
GUG4
Ser S7.5%
UCU66
UCC49
UCA108
UCG5
AGU21
AGC34
Pro P5.1%
CCU58
CCC31
CCA100
CCG4
Thr T7.8%
ACU77
ACC71
ACA143
ACG4
Ala A6.6%
GCU80
GCC77
GCA92
GCG1
Tyr Y3.4%
UAU65
UAC64
His H2.7%
CAU42
CAC60
Gln Q2.2%
CAA82
CAG2
Asn N4.1%
AAU72
AAC83
Lys K2.4%
AAA89
AAG3
Asp D1.8%
GAU31
GAC37
Glu E2.4%
GAA85
GAG6
Cys C0.7%
UGU13
UGC12
Trp W2.8%
UGA98
UGG7
Arg R1.8%
CGU14
CGC13
CGA40
CGG1
Gly G5.9%
GGU46
GGC38
GGA115
GGG23
Stop 0.2%
UAA7
UAG1
AGA0
AGG0

Genome map

38 annotated features in NC_073534.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (37.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA17070 bp+–
12S rRNARibosomal RNA721,020949 bp+39.4%
tRNA-ValTransfer RNA1,0211,08767 bp+–
16S rRNARibosomal RNA1,0882,6461,559 bp+37.2%
tRNA-Leu (UUR)Transfer RNA2,6472,72175 bp+–
ND1Protein-coding gene2,7223,676955 bp+36.1%
tRNA-IleTransfer RNA3,6773,74569 bp+–
tRNA-GlnTransfer RNA3,7433,81472 bp−–
tRNA-MetTransfer RNA3,8153,88369 bp+–
ND2Protein-coding gene3,8844,9271,044 bp+35.4%
tRNA-TrpTransfer RNA4,9304,99768 bp+–
tRNA-AlaTransfer RNA5,0015,06969 bp−–
tRNA-AsnTransfer RNA5,0705,14273 bp−–
tRNA-CysTransfer RNA5,1825,24968 bp−–
tRNA-TyrTransfer RNA5,2505,31667 bp−–
COX1Protein-coding gene5,3186,8591,542 bp+38.7%
tRNA-Ser (UCN)Transfer RNA6,8606,92869 bp−–
tRNA-AspTransfer RNA6,9367,00570 bp+–
COX2Protein-coding gene7,0067,686681 bp+37.6%
tRNA-LysTransfer RNA7,6897,75870 bp+–
ATP8Protein-coding gene7,7607,951192 bp+27.6%
ATP6Protein-coding gene7,9218,601681 bp+36.0%
COX3Protein-coding gene8,6019,384784 bp+39.5%
tRNA-GlyTransfer RNA9,3859,45268 bp+–
ND3Protein-coding gene9,4539,798346 bp+35.3%
tRNA-ArgTransfer RNA9,7999,86567 bp+–
ND4LProtein-coding gene9,86810,164297 bp+35.0%
ND4Protein-coding gene10,15811,5351,378 bp+36.4%
tRNA-HisTransfer RNA11,53611,60469 bp+–
tRNA-Ser (AGY)Transfer RNA11,60511,66359 bp+–
tRNA-Leu (CUN)Transfer RNA11,66411,73370 bp+–
ND5Protein-coding gene11,73413,5451,812 bp+37.8%
ND6Protein-coding gene13,54214,069528 bp−37.1%
tRNA-GluTransfer RNA14,07014,13970 bp−–
CYTBProtein-coding gene14,14415,2821,139 bp+40.0%
tRNA-ThrTransfer RNA15,28315,35068 bp+–
tRNA-ProTransfer RNA15,35115,43282 bp−–
D-loopControl region15,43316,8831,451 bp–39.4%

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