Richardsonius egregius
Lahontan redside
GC content
45.21%
Whole genome
Non-coding
1,037 bp
D-loop 884 bp
Where Lahontan redside sits among 2,335 species
Whole-genome GC content against maximum lifespan. Lahontan redside has the 2,012th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,646 bp
- GC skew (G − C) / (G + C)
- −0.176
- AT skew (A − T) / (A + T)
- +0.031
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,646 bp
Protein-coding11,403 bp
12S rRNA958 bp
16S rRNA1,688 bp
All tRNA1,560 bp
D-loop884 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 47.80% | −0.150 | −0.088 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 50.14% | −0.263 | −0.013 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 44.04% | −0.151 | −0.092 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 42.11% | −0.210 | +0.050 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 41.21% | −0.441 | +0.237 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 42.11% | −0.271 | −0.045 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 45.79% | −0.181 | −0.078 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 45.27% | −0.266 | −0.068 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 45.46% | −0.259 | −0.062 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,382 bp | 45.08% | −0.242 | −0.020 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 44.44% | −0.248 | −0.006 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 50.38% | −0.278 | +0.405 | |||||
| CYTBCytochrome b | 1,141 bp | 45.22% | −0.229 | −0.066 | |||||
| 12S rRNA12S ribosomal RNA | 958 bp | 50.42% | −0.056 | +0.221 | |||||
| 16S rRNA16S ribosomal RNA | 1,688 bp | 45.38% | −0.016 | +0.245 | |||||
| D-loopControl region (D-loop) | 884 bp | 37.56% | −0.193 | +0.004 |
Codon usage
Counts per codon, darker is more frequent3,805 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU111
UUC117
Leu L16.4%
UUA110
UUG38
CUU137
CUC92
CUA187
CUG59
Ile I6.7%
AUU157
AUC97
Met M4.7%
AUA110
AUG67
Val V6.8%
GUU73
GUC46
GUA92
GUG47
Ser S6.3%
UCU50
UCC50
UCA66
UCG18
AGU7
AGC47
Pro P5.7%
CCU45
CCC63
CCA76
CCG31
Thr T7.9%
ACU56
ACC95
ACA119
ACG31
Ala A9.2%
GCU60
GCC147
GCA119
GCG24
Tyr Y2.9%
UAU54
UAC58
His H2.7%
CAU36
CAC67
Gln Q2.6%
CAA72
CAG26
Asn N2.9%
AAU42
AAC68
Lys K2.0%
AAA54
AAG24
Asp D2.1%
GAU25
GAC55
Glu E2.7%
GAA65
GAG38
Cys C0.7%
UGU11
UGC15
Trp W3.2%
UGA93
UGG27
Arg R2.0%
CGU6
CGC14
CGA35
CGG21
Gly G6.5%
GGU40
GGC57
GGA83
GGG68
Stop 0.2%
UAA4
UAG3
AGA0
AGG0
Genome map
38 annotated features in NC_066951.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,027 | 958 bp | + | 50.4% |
| tRNA-Val | Transfer RNA | 1,028 | 1,099 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,100 | 2,787 | 1,688 bp | + | 45.4% |
| tRNA-Leu (UUR) | Transfer RNA | 2,788 | 2,864 | 77 bp | + | – |
| ND1 | Protein-coding gene | 2,865 | 3,839 | 975 bp | + | 47.8% |
| tRNA-Ile | Transfer RNA | 3,843 | 3,916 | 74 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,914 | 3,985 | 72 bp | − | – |
| tRNA-Met | Transfer RNA | 3,986 | 4,054 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,055 | 5,099 | 1,045 bp | + | 50.1% |
| tRNA-Trp | Transfer RNA | 5,100 | 5,170 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,173 | 5,240 | 68 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,242 | 5,314 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,345 | 5,416 | 72 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,413 | 5,485 | 73 bp | − | – |
| COX1 | Protein-coding gene | 5,487 | 7,037 | 1,551 bp | + | 44.0% |
| tRNA-Ser (UCN) | Transfer RNA | 7,038 | 7,108 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,112 | 7,176 | 65 bp | + | – |
| COX2 | Protein-coding gene | 7,198 | 7,888 | 691 bp | + | 42.1% |
| tRNA-Lys | Transfer RNA | 7,889 | 7,964 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,966 | 8,130 | 165 bp | + | 41.2% |
| ATP6 | Protein-coding gene | 8,124 | 8,807 | 684 bp | + | 42.1% |
| COX3 | Protein-coding gene | 8,807 | 9,590 | 784 bp | + | 45.8% |
| tRNA-Gly | Transfer RNA | 9,591 | 9,662 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,663 | 10,011 | 349 bp | + | 45.3% |
| tRNA-Arg | Transfer RNA | 10,012 | 10,080 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,081 | 10,377 | 297 bp | + | 45.5% |
| ND4 | Protein-coding gene | 10,371 | 11,752 | 1,382 bp | + | 45.1% |
| tRNA-His | Transfer RNA | 11,753 | 11,821 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,822 | 11,890 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,892 | 11,964 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,965 | 13,800 | 1,836 bp | + | 44.4% |
| ND6 | Protein-coding gene | 13,797 | 14,318 | 522 bp | − | 50.4% |
| tRNA-Glu | Transfer RNA | 14,319 | 14,386 | 68 bp | − | – |
| CYTB | Protein-coding gene | 14,392 | 15,532 | 1,141 bp | + | 45.2% |
| tRNA-Thr | Transfer RNA | 15,533 | 15,604 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,603 | 15,677 | 75 bp | − | – |
| D-loop | Control region | 15,678 | 16,561 | 884 bp | – | 37.6% |