MitoAge

Saguinus oedipus

Cotton-top tamarin

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Maximum lifespan
26.2 yr
AnAge record
mtDNA size
16,551 bp
RefSeq NC_021960.1
GC content
40.57%
Whole genome
Non-coding
1,215 bp
Including the D-loop

Where Cotton-top tamarin sits among 2,335 species

Whole-genome GC content against maximum lifespan. Cotton-top tamarin has the 580th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Cotton-top tamarin
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,551 bp
GC skew (G − C) / (G + C)
−0.328
AT skew (A − T) / (A + T)
+0.087

Life history

Maximum lifespan
26.2 years
Adult weight
445.5 g
Birth weight
39.4 g
Female sexual maturity
548 days
Male sexual maturity
550 days
Gestation or incubation
178 days
Litter or clutch size
1.9
Litters per year
1
Postnatal growth rate
0.0102 per day

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02701)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
high, large sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,551 bp
Protein-coding11,353 bp
12S rRNA946 bp
16S rRNA1,556 bp
All tRNA1,504 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1956 bp31.0%27.8%11.6%29.6%41.21%−0.437+0.053
ND2NADH dehydrogenase subunit 21,036 bp35.3%27.2%7.7%29.7%37.45%−0.588+0.130
COX1Cytochrome c oxidase subunit I1,557 bp28.1%29.4%16.4%26.1%42.45%−0.228−0.022
COX2Cytochrome c oxidase subunit II688 bp32.3%26.9%12.6%28.2%40.84%−0.381+0.091
ATP8ATP synthase F0 subunit 8201 bp40.8%27.9%7.0%24.4%31.34%−0.556+0.188
ATP6ATP synthase F0 subunit 6681 bp30.8%28.5%10.6%30.1%40.68%−0.480+0.040
COX3Cytochrome c oxidase subunit III784 bp27.0%27.0%15.3%30.6%45.92%−0.3330.000
ND3NADH dehydrogenase subunit 3346 bp30.6%27.5%12.7%29.2%41.91%−0.393+0.055
ND4LNADH dehydrogenase subunit 4L297 bp29.3%35.0%13.1%22.6%35.69%−0.264−0.089
ND4NADH dehydrogenase subunit 41,375 bp31.2%28.0%12.2%28.6%40.80%−0.401+0.054
ND5NADH dehydrogenase subunit 51,806 bp31.9%28.6%11.7%27.7%39.48%−0.405+0.054
ND6NADH dehydrogenase subunit 6534 bp40.6%21.0%10.5%27.9%38.39%−0.454+0.319
CYTBCytochrome b1,140 bp28.8%26.8%13.1%31.3%44.39%−0.411+0.035
12S rRNA12S ribosomal RNA946 bp33.7%22.2%19.0%25.1%44.08%−0.137+0.206
16S rRNA16S ribosomal RNA1,556 bp35.3%24.6%17.0%23.1%40.04%−0.152+0.179

Codon usage

Counts per codon, darker is more frequent

3,798 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.1%
UUU99
UUC132
Leu L15.6%
UUA104
UUG19
CUU88
CUC78
CUA261
CUG44
Ile I8.6%
AUU148
AUC179
Met M6.5%
AUA195
AUG50
Val V4.5%
GUU42
GUC30
GUA78
GUG21
Ser S7.8%
UCU56
UCC61
UCA118
UCG4
AGU16
AGC40
Pro P5.4%
CCU48
CCC69
CCA79
CCG8
Thr T9.1%
ACU66
ACC113
ACA155
ACG10
Ala A6.6%
GCU56
GCC100
GCA88
GCG7
Tyr Y3.8%
UAU56
UAC87
His H2.6%
CAU26
CAC71
Gln Q2.5%
CAA89
CAG5
Asn N3.9%
AAU54
AAC96
Lys K2.4%
AAA78
AAG14
Asp D1.8%
GAU29
GAC41
Glu E2.3%
GAA65
GAG24
Cys C0.6%
UGU12
UGC10
Trp W2.7%
UGA89
UGG15
Arg R1.6%
CGU4
CGC18
CGA35
CGG4
Gly G5.5%
GGU35
GGC70
GGA68
GGG34
Stop 0.2%
UAA5
UAG1
AGA0
AGG1

Genome map

37 annotated features in NC_021960.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (40.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16969 bp+–
12S rRNARibosomal RNA701,015946 bp+44.1%
tRNA-ValTransfer RNA1,0241,09067 bp+–
16S rRNARibosomal RNA1,0812,6361,556 bp+40.0%
tRNA-Leu (UUR)Transfer RNA2,6432,71775 bp+–
ND1Protein-coding gene2,7203,675956 bp+41.2%
tRNA-IleTransfer RNA3,6763,74469 bp+–
tRNA-GlnTransfer RNA3,7423,81372 bp−–
tRNA-MetTransfer RNA3,8173,88468 bp+–
ND2Protein-coding gene3,8874,9221,036 bp+37.5%
tRNA-TrpTransfer RNA4,9234,98967 bp+–
tRNA-AlaTransfer RNA5,0005,06869 bp−–
tRNA-AsnTransfer RNA5,0705,14273 bp−–
tRNA-CysTransfer RNA5,1765,24267 bp−–
tRNA-TyrTransfer RNA5,2425,31069 bp−–
COX1Protein-coding gene5,3196,8751,557 bp+42.5%
tRNA-Ser (UCN)Transfer RNA6,8636,93169 bp−–
tRNA-AspTransfer RNA6,9357,00369 bp+–
COX2Protein-coding gene7,0047,691688 bp+40.8%
tRNA-LysTransfer RNA7,6927,75867 bp+–
ATP8Protein-coding gene7,7597,959201 bp+31.3%
ATP6Protein-coding gene7,9208,600681 bp+40.7%
COX3Protein-coding gene8,6009,383784 bp+45.9%
tRNA-GlyTransfer RNA9,3849,45067 bp+–
ND3Protein-coding gene9,4519,796346 bp+41.9%
tRNA-ArgTransfer RNA9,7979,86266 bp+–
ND4LProtein-coding gene9,86410,160297 bp+35.7%
ND4Protein-coding gene10,15411,5281,375 bp+40.8%
tRNA-HisTransfer RNA11,52911,59769 bp+–
tRNA-Ser (AGY)Transfer RNA11,59811,65659 bp+–
tRNA-Leu (CUN)Transfer RNA11,65711,72771 bp+–
ND5Protein-coding gene11,73113,5361,806 bp+39.5%
ND6Protein-coding gene13,54014,073534 bp−38.4%
tRNA-GluTransfer RNA14,07414,14269 bp−–
CYTBProtein-coding gene14,14715,2861,140 bp+44.4%
tRNA-ThrTransfer RNA15,28815,35568 bp+–
tRNA-ProTransfer RNA15,35715,42569 bp−–

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