MitoAge

Saimiri boliviensis

Bolivian squirrel monkey

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Maximum lifespan
30.3 yr
AnAge record
mtDNA size
16,473 bp
RefSeq NC_018096.1
GC content
40.67%
Whole genome
Non-coding
1,139 bp
D-loop 1,061 bp

Where Bolivian squirrel monkey sits among 2,335 species

Whole-genome GC content against maximum lifespan. Bolivian squirrel monkey has the 432nd longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Bolivian squirrel monkey
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,473 bp
GC skew (G − C) / (G + C)
−0.351
AT skew (A − T) / (A + T)
+0.088

Life history

Maximum lifespan
30.3 years
Adult weight
615 g
Female sexual maturity
3 years
Male sexual maturity
5 years
Gestation or incubation
158 days
Litter or clutch size
1

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02706)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, large sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,473 bp
Protein-coding11,325 bp
12S rRNA954 bp
16S rRNA1,551 bp
All tRNA1,504 bp
D-loop1,061 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1955 bp30.7%28.1%10.9%30.4%41.26%−0.472+0.045
ND2NADH dehydrogenase subunit 21,039 bp35.9%26.4%7.7%30.0%37.73%−0.592+0.153
COX1Cytochrome c oxidase subunit I1,542 bp27.4%30.5%16.3%25.8%42.15%−0.225−0.054
COX2Cytochrome c oxidase subunit II674 bp31.9%27.2%13.5%27.4%40.95%−0.341+0.080
ATP8ATP synthase F0 subunit 8201 bp40.8%26.4%6.5%26.4%32.84%−0.606+0.215
ATP6ATP synthase F0 subunit 6681 bp31.9%29.1%8.7%30.4%39.06%−0.556+0.046
COX3Cytochrome c oxidase subunit III784 bp29.0%26.7%13.9%30.5%44.39%−0.374+0.041
ND3NADH dehydrogenase subunit 3346 bp32.4%30.6%9.2%27.7%36.99%−0.500+0.028
ND4LNADH dehydrogenase subunit 4L297 bp27.9%32.3%13.8%25.9%39.73%−0.305−0.073
ND4NADH dehydrogenase subunit 41,375 bp31.7%28.1%10.6%29.6%40.22%−0.472+0.061
ND5NADH dehydrogenase subunit 51,809 bp31.7%27.5%10.9%29.9%40.74%−0.465+0.071
ND6NADH dehydrogenase subunit 6534 bp39.5%22.3%9.2%29.0%38.20%−0.520+0.279
CYTBCytochrome b1,140 bp30.5%27.6%12.0%29.8%41.84%−0.426+0.050
12S rRNA12S ribosomal RNA954 bp33.9%21.9%19.3%24.9%44.24%−0.128+0.214
16S rRNA16S ribosomal RNA1,551 bp35.5%24.2%16.5%23.8%40.30%−0.181+0.188
D-loopControl region (D-loop)1,061 bp28.8%27.6%17.2%26.4%43.54%−0.212+0.022

Codon usage

Counts per codon, darker is more frequent

3,790 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.8%
UUU100
UUC120
Leu L16.1%
UUA91
UUG15
CUU93
CUC113
CUA277
CUG23
Ile I8.6%
AUU168
AUC158
Met M6.8%
AUA208
AUG50
Val V3.9%
GUU30
GUC38
GUA62
GUG17
Ser S7.7%
UCU48
UCC73
UCA104
UCG5
AGU20
AGC41
Pro P5.5%
CCU45
CCC73
CCA81
CCG8
Thr T9.4%
ACU76
ACC110
ACA160
ACG10
Ala A6.3%
GCU58
GCC90
GCA83
GCG8
Tyr Y3.7%
UAU54
UAC88
His H2.7%
CAU34
CAC67
Gln Q2.4%
CAA82
CAG10
Asn N4.0%
AAU61
AAC91
Lys K2.5%
AAA84
AAG10
Asp D1.7%
GAU26
GAC38
Glu E2.4%
GAA75
GAG15
Cys C0.6%
UGU10
UGC12
Trp W2.7%
UGA93
UGG11
Arg R1.6%
CGU6
CGC18
CGA33
CGG4
Gly G5.4%
GGU38
GGC64
GGA74
GGG29
Stop 0.2%
UAA4
UAG3
AGA0
AGG0

Genome map

38 annotated features in NC_018096.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (40.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA17070 bp+–
12S rRNARibosomal RNA711,024954 bp+44.2%
tRNA-ValTransfer RNA1,0251,09268 bp+–
16S rRNARibosomal RNA1,0932,6431,551 bp+40.3%
tRNA-Leu (UUR)Transfer RNA2,6442,71875 bp+–
ND1Protein-coding gene2,7213,675955 bp+41.3%
tRNA-IleTransfer RNA3,6763,74570 bp+–
tRNA-GlnTransfer RNA3,7433,81472 bp−–
tRNA-MetTransfer RNA3,8183,88568 bp+–
ND2Protein-coding gene3,8884,9261,039 bp+37.7%
tRNA-TrpTransfer RNA4,9274,99367 bp+–
tRNA-AlaTransfer RNA5,0015,06868 bp−–
tRNA-AsnTransfer RNA5,0705,14273 bp−–
tRNA-CysTransfer RNA5,1765,24267 bp−–
tRNA-TyrTransfer RNA5,2435,30866 bp−–
COX1Protein-coding gene5,3146,8551,542 bp+42.2%
tRNA-Ser (UCN)Transfer RNA6,8586,92568 bp−–
tRNA-AspTransfer RNA6,9296,99769 bp+–
COX2Protein-coding gene6,9987,671674 bp+41.0%
tRNA-LysTransfer RNA7,6867,75166 bp+–
ATP8Protein-coding gene7,7527,952201 bp+32.8%
ATP6Protein-coding gene7,9138,593681 bp+39.1%
COX3Protein-coding gene8,5939,376784 bp+44.4%
tRNA-GlyTransfer RNA9,3779,44367 bp+–
ND3Protein-coding gene9,4449,789346 bp+37.0%
tRNA-ArgTransfer RNA9,7909,85566 bp+–
ND4LProtein-coding gene9,85710,153297 bp+39.7%
ND4Protein-coding gene10,14711,5211,375 bp+40.2%
tRNA-HisTransfer RNA11,52211,59069 bp+–
tRNA-Ser (AGY)Transfer RNA11,59111,64959 bp+–
tRNA-Leu (CUN)Transfer RNA11,65011,72071 bp+–
ND5Protein-coding gene11,72113,5291,809 bp+40.7%
ND6Protein-coding gene13,52614,059534 bp−38.2%
tRNA-GluTransfer RNA14,06014,12869 bp−–
CYTBProtein-coding gene14,13315,2721,140 bp+41.8%
tRNA-ThrTransfer RNA15,27415,34370 bp+–
tRNA-ProTransfer RNA15,34415,41269 bp−–
D-loopControl region15,41316,4731,061 bp–43.5%

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