MitoAge

Saimiri sciureus

South American squirrel monkey

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Maximum lifespan
30.2 yr
AnAge record
mtDNA size
16,474 bp
RefSeq NC_012775.1
GC content
40.69%
Whole genome
Non-coding
1,122 bp
D-loop 1,061 bp

Where South American squirrel monkey sits among 2,335 species

Whole-genome GC content against maximum lifespan. South American squirrel monkey has the 433rd longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %South American squirrel monkey
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Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,474 bp
GC skew (G − C) / (G + C)
−0.350
AT skew (A − T) / (A + T)
+0.088

Life history

Maximum lifespan
30.2 years
Adult weight
925 g
Birth weight
107 g
Basal metabolic rate
4.429 W
Body temperature
38 °C
Female sexual maturity
2.7 years
Male sexual maturity
5 years
Gestation or incubation
161 days
Litter or clutch size
1
Litters per year
1
Postnatal growth rate
0.0125 per day

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02708)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
high, large sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,474 bp
Protein-coding11,345 bp
12S rRNA954 bp
16S rRNA1,550 bp
All tRNA1,508 bp
D-loop1,061 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1957 bp30.8%28.0%10.9%30.3%41.17%−0.472+0.048
ND2NADH dehydrogenase subunit 21,041 bp35.9%26.3%7.8%30.0%37.75%−0.588+0.154
COX1Cytochrome c oxidase subunit I1,542 bp27.4%30.5%16.3%25.8%42.15%−0.225−0.054
COX2Cytochrome c oxidase subunit II688 bp31.8%27.6%13.4%27.2%40.55%−0.341+0.071
ATP8ATP synthase F0 subunit 8201 bp40.8%26.4%6.5%26.4%32.84%−0.606+0.215
ATP6ATP synthase F0 subunit 6681 bp31.9%29.1%8.7%30.4%39.06%−0.556+0.046
COX3Cytochrome c oxidase subunit III784 bp29.0%26.7%13.9%30.5%44.39%−0.374+0.041
ND3NADH dehydrogenase subunit 3348 bp32.5%30.5%9.5%27.6%37.07%−0.488+0.032
ND4LNADH dehydrogenase subunit 4L297 bp27.9%32.3%13.8%25.9%39.73%−0.305−0.073
ND4NADH dehydrogenase subunit 41,375 bp31.7%28.1%10.6%29.6%40.22%−0.472+0.061
ND5NADH dehydrogenase subunit 51,809 bp31.7%27.5%10.9%29.9%40.80%−0.463+0.070
ND6NADH dehydrogenase subunit 6534 bp39.5%22.3%9.2%29.0%38.20%−0.520+0.279
CYTBCytochrome b1,140 bp30.5%27.5%12.0%29.9%41.93%−0.427+0.051
12S rRNA12S ribosomal RNA954 bp33.9%21.9%19.3%24.9%44.24%−0.128+0.214
16S rRNA16S ribosomal RNA1,550 bp35.4%24.2%16.5%23.9%40.39%−0.182+0.188
D-loopControl region (D-loop)1,061 bp28.8%27.7%17.2%26.2%43.45%−0.206+0.020

Codon usage

Counts per codon, darker is more frequent

3,798 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.8%
UUU100
UUC120
Leu L16.1%
UUA92
UUG15
CUU93
CUC113
CUA277
CUG23
Ile I8.6%
AUU168
AUC159
Met M6.8%
AUA207
AUG50
Val V3.9%
GUU30
GUC38
GUA64
GUG17
Ser S7.7%
UCU48
UCC73
UCA104
UCG5
AGU20
AGC41
Pro P5.5%
CCU45
CCC73
CCA81
CCG8
Thr T9.4%
ACU76
ACC110
ACA160
ACG10
Ala A6.3%
GCU58
GCC90
GCA83
GCG8
Tyr Y3.8%
UAU54
UAC90
His H2.7%
CAU34
CAC67
Gln Q2.4%
CAA82
CAG10
Asn N4.0%
AAU61
AAC91
Lys K2.5%
AAA84
AAG10
Asp D1.7%
GAU26
GAC38
Glu E2.4%
GAA75
GAG15
Cys C0.6%
UGU10
UGC12
Trp W2.7%
UGA93
UGG11
Arg R1.6%
CGU6
CGC18
CGA33
CGG4
Gly G5.4%
GGU38
GGC64
GGA74
GGG29
Stop 0.3%
UAA5
UAG5
AGA0
AGG0

Genome map

38 annotated features in NC_012775.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (40.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA17070 bp+–
12S rRNARibosomal RNA711,024954 bp+44.2%
tRNA-ValTransfer RNA1,0251,09268 bp+–
16S rRNARibosomal RNA1,0932,6421,550 bp+40.4%
tRNA-Leu (UUR)Transfer RNA2,6442,71875 bp+–
ND1Protein-coding gene2,7213,677957 bp+41.2%
tRNA-IleTransfer RNA3,6773,74569 bp+–
tRNA-GlnTransfer RNA3,7433,81472 bp−–
tRNA-MetTransfer RNA3,8183,88568 bp+–
ND2Protein-coding gene3,8884,9281,041 bp+37.8%
tRNA-TrpTransfer RNA4,9274,99367 bp+–
tRNA-AlaTransfer RNA5,0015,06868 bp−–
tRNA-AsnTransfer RNA5,0705,14273 bp−–
tRNA-CysTransfer RNA5,1765,24267 bp−–
tRNA-TyrTransfer RNA5,2425,30867 bp−–
COX1Protein-coding gene5,3146,8551,542 bp+42.2%
tRNA-Ser (UCN)Transfer RNA6,8566,92772 bp−–
tRNA-AspTransfer RNA6,9296,99769 bp+–
COX2Protein-coding gene6,9987,685688 bp+40.6%
tRNA-LysTransfer RNA7,6867,75166 bp+–
ATP8Protein-coding gene7,7527,952201 bp+32.8%
ATP6Protein-coding gene7,9138,593681 bp+39.1%
COX3Protein-coding gene8,5939,376784 bp+44.4%
tRNA-GlyTransfer RNA9,3779,44367 bp+–
ND3Protein-coding gene9,4449,791348 bp+37.1%
tRNA-ArgTransfer RNA9,7909,85566 bp+–
ND4LProtein-coding gene9,85710,153297 bp+39.7%
ND4Protein-coding gene10,14711,5211,375 bp+40.2%
tRNA-HisTransfer RNA11,52211,59069 bp+–
tRNA-Ser (AGY)Transfer RNA11,59111,65060 bp+–
tRNA-Leu (CUN)Transfer RNA11,65111,72171 bp+–
ND5Protein-coding gene11,72213,5301,809 bp+40.8%
ND6Protein-coding gene13,52714,060534 bp−38.2%
tRNA-GluTransfer RNA14,06114,12969 bp−–
CYTBProtein-coding gene14,13415,2731,140 bp+41.9%
tRNA-ThrTransfer RNA15,27515,34470 bp+–
tRNA-ProTransfer RNA15,34515,41369 bp−–
D-loopControl region15,41416,4741,061 bp–43.5%

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