MitoAge

Salmo salar

Atlantic salmon

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Maximum lifespan
13 yr
AnAge record
mtDNA size
16,665 bp
RefSeq NC_001960.1
GC content
45.23%
Whole genome
Non-coding
1,078 bp
D-loop 1,006 bp

Where Atlantic salmon sits among 2,335 species

Whole-genome GC content against maximum lifespan. Atlantic salmon has the 1,347th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Atlantic salmon
  • This species
  • Other ray-finned fishes
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,665 bp
GC skew (G − C) / (G + C)
−0.283
AT skew (A − T) / (A + T)
+0.039

Life history

Maximum lifespan
13 years
Adult weight
25.7 kg
Male sexual maturity
5 years

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04473)

About this record

Lifespan source
AnAge build 15
Based on
an animal in the wild
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,665 bp
Protein-coding11,412 bp
12S rRNA946 bp
16S rRNA1,678 bp
All tRNA1,552 bp
D-loop1,006 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1975 bp25.2%27.3%15.7%31.8%47.49%−0.339−0.039
ND2NADH dehydrogenase subunit 21,050 bp28.1%26.3%11.7%33.9%45.62%−0.486+0.033
COX1Cytochrome c oxidase subunit I1,551 bp24.5%30.6%17.7%27.1%44.87%−0.210−0.111
COX2Cytochrome c oxidase subunit II691 bp27.5%28.4%16.4%27.8%44.14%−0.259−0.016
ATP8ATP synthase F0 subunit 8168 bp29.8%26.2%12.5%31.5%44.05%−0.432+0.064
ATP6ATP synthase F0 subunit 6684 bp26.8%28.7%11.7%32.9%44.59%−0.475−0.034
COX3Cytochrome c oxidase subunit III786 bp26.5%28.9%15.5%29.1%44.66%−0.305−0.044
ND3NADH dehydrogenase subunit 3349 bp23.5%27.2%14.6%34.7%49.28%−0.407−0.073
ND4LNADH dehydrogenase subunit 4L297 bp25.6%25.9%15.5%33.0%48.49%−0.361−0.007
ND4NADH dehydrogenase subunit 41,381 bp27.7%28.0%14.3%30.0%44.32%−0.353−0.004
ND5NADH dehydrogenase subunit 51,839 bp29.6%27.4%12.5%30.6%43.01%−0.421+0.038
ND6NADH dehydrogenase subunit 6522 bp38.1%15.5%12.3%34.1%46.36%−0.471+0.421
CYTBCytochrome b1,141 bp25.0%29.4%14.9%30.8%45.66%−0.347−0.081
12S rRNA12S ribosomal RNA946 bp30.4%19.9%22.4%27.3%49.68%−0.098+0.210
16S rRNA16S ribosomal RNA1,678 bp33.0%19.5%22.1%25.4%47.50%−0.069+0.255
D-loopControl region (D-loop)1,006 bp31.3%31.8%14.8%22.1%36.88%−0.197−0.008

Codon usage

Counts per codon, darker is more frequent

3,810 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.0%
UUU115
UUC114
Leu L17.1%
UUA100
UUG23
CUU152
CUC158
CUA193
CUG24
Ile I7.3%
AUU143
AUC134
Met M4.0%
AUA111
AUG42
Val V5.9%
GUU55
GUC61
GUA84
GUG23
Ser S6.4%
UCU54
UCC75
UCA47
UCG11
AGU17
AGC38
Pro P5.6%
CCU51
CCC87
CCA64
CCG11
Thr T8.3%
ACU78
ACC117
ACA106
ACG16
Ala A9.0%
GCU75
GCC152
GCA99
GCG15
Tyr Y3.0%
UAU46
UAC67
His H2.7%
CAU29
CAC75
Gln Q2.6%
CAA90
CAG10
Asn N3.0%
AAU46
AAC69
Lys K2.0%
AAA69
AAG6
Asp D1.9%
GAU21
GAC51
Glu E2.8%
GAA99
GAG8
Cys C0.7%
UGU10
UGC17
Trp W3.2%
UGA112
UGG10
Arg R2.0%
CGU7
CGC19
CGA44
CGG5
Gly G6.5%
GGU31
GGC85
GGA90
GGG40
Stop 0.2%
UAA8
UAG1
AGA0
AGG0

Genome map

38 annotated features in NC_001960.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (45.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
D-loopControl region11,0061,006 bp–36.9%
tRNA-PheTransfer RNA1,0071,07468 bp+–
12S rRNARibosomal RNA1,0752,020946 bp+49.7%
tRNA-ValTransfer RNA2,0212,09272 bp+–
16S rRNARibosomal RNA2,0933,7701,678 bp+47.5%
tRNA-Leu (UUR)Transfer RNA3,7713,84575 bp+–
ND1Protein-coding gene3,8464,820975 bp+47.5%
tRNA-IleTransfer RNA4,8284,89972 bp+–
tRNA-GlnTransfer RNA4,8974,96771 bp−–
tRNA-MetTransfer RNA4,9675,03569 bp+–
ND2Protein-coding gene5,0366,0851,050 bp+45.6%
tRNA-TrpTransfer RNA6,0886,15669 bp+–
tRNA-AlaTransfer RNA6,1606,22869 bp−–
tRNA-AsnTransfer RNA6,2306,30273 bp−–
tRNA-CysTransfer RNA6,3376,40367 bp−–
tRNA-TyrTransfer RNA6,4046,47471 bp−–
COX1Protein-coding gene6,4768,0261,551 bp+44.9%
tRNA-Ser (UCN)Transfer RNA8,0278,09771 bp−–
tRNA-AspTransfer RNA8,1028,17574 bp+–
COX2Protein-coding gene8,1908,880691 bp+44.1%
tRNA-LysTransfer RNA8,8818,95474 bp+–
ATP8Protein-coding gene8,9569,123168 bp+44.1%
ATP6Protein-coding gene9,1149,797684 bp+44.6%
COX3Protein-coding gene9,79710,582786 bp+44.7%
tRNA-GlyTransfer RNA10,58210,65170 bp+–
ND3Protein-coding gene10,65211,000349 bp+49.3%
tRNA-ArgTransfer RNA11,00111,07070 bp+–
ND4LProtein-coding gene11,07111,367297 bp+48.5%
ND4Protein-coding gene11,36112,7411,381 bp+44.3%
tRNA-HisTransfer RNA12,74212,81069 bp+–
tRNA-Ser (AGY)Transfer RNA12,81112,87969 bp+–
tRNA-Leu (CUN)Transfer RNA12,88112,95373 bp+–
ND5Protein-coding gene12,95414,7921,839 bp+43.0%
ND6Protein-coding gene14,78915,310522 bp−46.4%
tRNA-GluTransfer RNA15,31115,37969 bp−–
CYTBProtein-coding gene15,38416,5241,141 bp+45.7%
tRNA-ThrTransfer RNA16,52516,59672 bp+–
tRNA-ProTransfer RNA16,59616,66570 bp−–

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