Salmo trutta

Brown trout

Maximum lifespan

38 yr

AnAge record

mtDNA size

16,677 bp

RefSeq NC_024032.1

GC content

45.92%

Whole genome

Non-coding

1,082 bp

D-loop 1,013 bp

Where Brown trout sits among 2,335 species

Whole-genome GC content against maximum lifespan. Brown trout has the 285th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,677 bp

GC skew (G − C) / (G + C): −0.283
AT skew (A − T) / (A + T): +0.040

Life history

Maximum lifespan: 38 years
Litter or clutch size: 8,000

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04474)

About this record

Lifespan source: AnAge build 15
Based on: an observed animal, origin not stated
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,677 bp

Protein-coding11,411 bp

12S rRNA947 bp

16S rRNA1,681 bp

All tRNA1,556 bp

D-loop1,013 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Salmo trutta genes

ND1NADH dehydrogenase subunit 1	975 bp	26.9%	26.8%	14.4%	32.0%	46.36%	−0.381	+0.002
ND2NADH dehydrogenase subunit 2	1,050 bp	26.8%	25.1%	13.1%	35.0%	48.10%	−0.453	+0.031
COX1Cytochrome c oxidase subunit I	1,551 bp	24.4%	29.5%	17.7%	28.3%	46.04%	−0.230	−0.094
COX2Cytochrome c oxidase subunit II	691 bp	27.8%	27.9%	15.9%	28.4%	44.28%	−0.281	−0.003
ATP8ATP synthase F0 subunit 8	168 bp	29.8%	25.0%	12.5%	32.7%	45.24%	−0.447	+0.087
ATP6ATP synthase F0 subunit 6	684 bp	25.3%	28.1%	12.6%	34.1%	46.64%	−0.461	−0.052
COX3Cytochrome c oxidase subunit III	785 bp	24.6%	29.4%	16.9%	29.0%	45.99%	−0.263	−0.090
ND3NADH dehydrogenase subunit 3	349 bp	22.9%	27.5%	15.5%	34.1%	49.57%	−0.376	−0.091
ND4LNADH dehydrogenase subunit 4L	297 bp	24.9%	24.6%	16.2%	34.3%	50.51%	−0.360	+0.007
ND4NADH dehydrogenase subunit 4	1,381 bp	27.8%	27.6%	13.8%	30.8%	44.61%	−0.380	+0.004
ND5NADH dehydrogenase subunit 5	1,839 bp	28.8%	27.3%	13.4%	30.5%	43.88%	−0.388	+0.027
ND6NADH dehydrogenase subunit 6	522 bp	37.4%	14.8%	13.2%	34.7%	47.89%	−0.448	+0.434
CYTBCytochrome b	1,141 bp	24.4%	29.0%	15.4%	31.2%	46.63%	−0.338	−0.087
12S rRNA12S ribosomal RNA	947 bp	29.9%	19.7%	22.8%	27.6%	50.37%	−0.094	+0.204
16S rRNA16S ribosomal RNA	1,681 bp	32.6%	19.7%	22.2%	25.5%	47.71%	−0.067	+0.247
D-loopControl region (D-loop)	1,013 bp	31.6%	31.6%	14.1%	22.7%	36.82%	−0.233	0.000

Codon usage

Counts per codon, darker is more frequent

Gene

3,809 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.0%

UUU114

UUC115

Leu L17.1%

UUA93

UUG26

CUU137

CUC178

CUA182

CUG36

Ile I7.2%

AUU142

AUC131

Met M3.9%

AUA108

AUG39

Val V6.0%

GUU57

GUC62

GUA83

GUG26

Ser S6.4%

UCU49

UCC78

UCA50

UCG10

AGU13

AGC44

Pro P5.6%

CCU47

CCC93

CCA60

CCG13

Thr T8.3%

ACU67

ACC125

ACA119

ACG5

Ala A9.0%

GCU75

GCC155

GCA96

GCG17

Tyr Y2.9%

UAU39

UAC72

His H2.8%

CAU31

CAC75

Gln Q2.7%

CAA85

CAG16

Asn N2.9%

AAU39

AAC73

Lys K2.0%

AAA63

AAG12

Asp D1.9%

GAU21

GAC51

Glu E2.9%

GAA98

GAG11

Cys C0.7%

UGU10

UGC17

Trp W3.2%

UGA105

UGG17

Arg R2.0%

CGU10

CGC15

CGA45

CGG5

Gly G6.5%

GGU31

GGC90

GGA84

GGG41

Stop 0.2%

UAA7

UAG1

AGA0

AGG0

Genome map

38 annotated features in NC_024032.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (45.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Salmo trutta (NC_024032.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	68	68 bp	+	–
12S rRNA	Ribosomal RNA	69	1,015	947 bp	+	50.4%
tRNA-Val	Transfer RNA	1,016	1,087	72 bp	+	–
16S rRNA	Ribosomal RNA	1,088	2,768	1,681 bp	+	47.7%
tRNA-Leu (UUR)	Transfer RNA	2,769	2,843	75 bp	+	–
ND1	Protein-coding gene	2,844	3,818	975 bp	+	46.4%
tRNA-Ile	Transfer RNA	3,826	3,897	72 bp	+	–
tRNA-Gln	Transfer RNA	3,895	3,965	71 bp	−	–
tRNA-Met	Transfer RNA	3,965	4,033	69 bp	+	–
ND2	Protein-coding gene	4,034	5,083	1,050 bp	+	48.1%
tRNA-Trp	Transfer RNA	5,085	5,156	72 bp	+	–
tRNA-Ala	Transfer RNA	5,159	5,227	69 bp	−	–
tRNA-Asn	Transfer RNA	5,229	5,301	73 bp	−	–
tRNA-Cys	Transfer RNA	5,336	5,402	67 bp	−	–
tRNA-Tyr	Transfer RNA	5,403	5,473	71 bp	−	–
COX1	Protein-coding gene	5,475	7,025	1,551 bp	+	46.0%
tRNA-Ser (UCN)	Transfer RNA	7,026	7,096	71 bp	−	–
tRNA-Asp	Transfer RNA	7,101	7,174	74 bp	+	–
COX2	Protein-coding gene	7,189	7,879	691 bp	+	44.3%
tRNA-Lys	Transfer RNA	7,880	7,953	74 bp	+	–
ATP8	Protein-coding gene	7,955	8,122	168 bp	+	45.2%
ATP6	Protein-coding gene	8,113	8,796	684 bp	+	46.6%
COX3	Protein-coding gene	8,796	9,580	785 bp	+	46.0%
tRNA-Gly	Transfer RNA	9,581	9,650	70 bp	+	–
ND3	Protein-coding gene	9,651	9,999	349 bp	+	49.6%
tRNA-Arg	Transfer RNA	10,000	10,069	70 bp	+	–
ND4L	Protein-coding gene	10,070	10,366	297 bp	+	50.5%
ND4	Protein-coding gene	10,360	11,740	1,381 bp	+	44.6%
tRNA-His	Transfer RNA	11,741	11,810	70 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,811	11,879	69 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,881	11,953	73 bp	+	–
ND5	Protein-coding gene	11,954	13,792	1,839 bp	+	43.9%
ND6	Protein-coding gene	13,789	14,310	522 bp	−	47.9%
tRNA-Glu	Transfer RNA	14,311	14,379	69 bp	−	–
CYTB	Protein-coding gene	14,383	15,523	1,141 bp	+	46.6%
tRNA-Thr	Transfer RNA	15,524	15,595	72 bp	+	–
tRNA-Pro	Transfer RNA	15,595	15,664	70 bp	−	–
D-loop	Control region	15,665	16,677	1,013 bp	–	36.8%