MitoAge

Salvelinus fontinalis

Brook trout, or Bunnylake brook trout

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Maximum lifespan
24 yr
AnAge record
mtDNA size
16,624 bp
RefSeq NC_000860.1
GC content
45.21%
Whole genome
Non-coding
1,033 bp
D-loop 964 bp

Where Brook trout, or Bunnylake brook trout sits among 2,335 species

Whole-genome GC content against maximum lifespan. Brook trout, or Bunnylake brook trout has the 680th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Brook trout, or Bunnylake brook trout
  • This species
  • Other ray-finned fishes
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,624 bp
GC skew (G − C) / (G + C)
−0.252
AT skew (A − T) / (A + T)
+0.030

Life history

Maximum lifespan
24 years
Adult weight
4.4 kg
Female sexual maturity
2 years
Male sexual maturity
2 years

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04476)

About this record

Lifespan source
AnAge build 15
Based on
an animal in the wild
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Updated in build 2
In the database since
build 1 (2015-07-01)
Last changed
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,624 bp
Protein-coding11,419 bp
12S rRNA947 bp
16S rRNA1,680 bp
All tRNA1,552 bp
D-loop964 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1975 bp25.8%28.5%15.0%30.7%45.64%−0.344−0.049
ND2NADH dehydrogenase subunit 21,050 bp26.6%28.4%14.4%30.7%45.05%−0.362−0.033
COX1Cytochrome c oxidase subunit I1,551 bp25.0%30.7%18.2%26.1%44.29%−0.179−0.102
COX2Cytochrome c oxidase subunit II691 bp27.8%27.1%16.8%28.4%45.15%−0.256+0.013
ATP8ATP synthase F0 subunit 8168 bp29.8%26.2%11.9%32.1%44.05%−0.459+0.064
ATP6ATP synthase F0 subunit 6684 bp24.3%30.0%13.6%32.2%45.76%−0.406−0.105
COX3Cytochrome c oxidase subunit III786 bp24.2%29.3%17.3%29.3%46.57%−0.257−0.095
ND3NADH dehydrogenase subunit 3351 bp23.6%28.8%14.5%33.0%47.58%−0.389−0.098
ND4LNADH dehydrogenase subunit 4L297 bp24.2%27.3%16.2%32.3%48.49%−0.333−0.059
ND4NADH dehydrogenase subunit 41,386 bp28.1%28.6%15.0%28.4%43.36%−0.308−0.009
ND5NADH dehydrogenase subunit 51,839 bp29.3%28.2%13.1%29.4%42.52%−0.384+0.020
ND6NADH dehydrogenase subunit 6522 bp38.5%13.4%13.4%34.7%48.08%−0.442+0.483
CYTBCytochrome b1,141 bp24.7%28.8%16.1%30.3%46.45%−0.306−0.077
12S rRNA12S ribosomal RNA947 bp30.2%20.1%22.7%27.0%49.74%−0.087+0.202
16S rRNA16S ribosomal RNA1,680 bp33.0%19.3%22.5%25.2%47.74%−0.057+0.262
D-loopControl region (D-loop)964 bp32.0%29.7%15.7%22.7%38.38%−0.184+0.037

Codon usage

Counts per codon, darker is more frequent

3,813 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.0%
UUU117
UUC111
Leu L17.1%
UUA117
UUG26
CUU167
CUC126
CUA181
CUG34
Ile I7.2%
AUU155
AUC119
Met M4.0%
AUA100
AUG54
Val V6.0%
GUU58
GUC53
GUA92
GUG27
Ser S6.2%
UCU55
UCC65
UCA55
UCG10
AGU13
AGC40
Pro P5.6%
CCU46
CCC90
CCA65
CCG14
Thr T8.1%
ACU79
ACC122
ACA97
ACG9
Ala A9.2%
GCU85
GCC148
GCA93
GCG25
Tyr Y2.9%
UAU50
UAC61
His H2.8%
CAU29
CAC77
Gln Q2.5%
CAA80
CAG16
Asn N3.0%
AAU46
AAC67
Lys K2.0%
AAA68
AAG10
Asp D2.0%
GAU20
GAC55
Glu E2.8%
GAA84
GAG23
Cys C0.7%
UGU14
UGC14
Trp W3.2%
UGA105
UGG16
Arg R2.0%
CGU11
CGC14
CGA42
CGG8
Gly G6.4%
GGU34
GGC68
GGA88
GGG54
Stop 0.3%
UAA8
UAG2
AGA1
AGG0

Genome map

38 annotated features in NC_000860.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (45.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
D-loopControl region1964964 bp–38.4%
tRNA-PheTransfer RNA9651,03268 bp+–
12S rRNARibosomal RNA1,0331,979947 bp+49.7%
tRNA-ValTransfer RNA1,9802,05172 bp+–
16S rRNARibosomal RNA2,0523,7311,680 bp+47.7%
tRNA-Leu (UUR)Transfer RNA3,7323,80675 bp+–
ND1Protein-coding gene3,8074,781975 bp+45.6%
tRNA-IleTransfer RNA4,7884,85972 bp+–
tRNA-GlnTransfer RNA4,8574,92771 bp−–
tRNA-MetTransfer RNA4,9274,99569 bp+–
ND2Protein-coding gene4,9966,0451,050 bp+45.1%
tRNA-TrpTransfer RNA6,0466,11570 bp+–
tRNA-AlaTransfer RNA6,1186,18669 bp−–
tRNA-AsnTransfer RNA6,1886,26073 bp−–
tRNA-CysTransfer RNA6,2976,36367 bp−–
tRNA-TyrTransfer RNA6,3636,43472 bp−–
COX1Protein-coding gene6,4367,9861,551 bp+44.3%
tRNA-Ser (UCN)Transfer RNA7,9878,05771 bp−–
tRNA-AspTransfer RNA8,0628,13574 bp+–
COX2Protein-coding gene8,1508,840691 bp+45.2%
tRNA-LysTransfer RNA8,8418,91474 bp+–
ATP8Protein-coding gene8,9169,083168 bp+44.1%
ATP6Protein-coding gene9,0749,757684 bp+45.8%
COX3Protein-coding gene9,75710,542786 bp+46.6%
tRNA-GlyTransfer RNA10,54210,61170 bp+–
ND3Protein-coding gene10,61210,962351 bp+47.6%
tRNA-ArgTransfer RNA10,96211,03069 bp+–
ND4LProtein-coding gene11,03111,327297 bp+48.5%
ND4Protein-coding gene11,32112,7061,386 bp+43.4%
tRNA-HisTransfer RNA12,70212,77069 bp+–
tRNA-Ser (AGY)Transfer RNA12,77112,83969 bp+–
tRNA-Leu (CUN)Transfer RNA12,84112,91373 bp+–
ND5Protein-coding gene12,91414,7521,839 bp+42.5%
ND6Protein-coding gene14,74915,270522 bp−48.1%
tRNA-GluTransfer RNA15,27115,33969 bp−–
CYTBProtein-coding gene15,34316,4831,141 bp+46.5%
tRNA-ThrTransfer RNA16,48416,55572 bp+–
tRNA-ProTransfer RNA16,55516,62470 bp−–

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