Salvelinus leucomaenis
Whitespotted char
GC content
45.29%
Whole genome
Non-coding
1,066 bp
D-loop 999 bp
Where Whitespotted char sits among 2,335 species
Whole-genome GC content against maximum lifespan. Whitespotted char has the 1,660th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,658 bp
- GC skew (G − C) / (G + C)
- −0.254
- AT skew (A − T) / (A + T)
- +0.031
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,658 bp
Protein-coding11,411 bp
12S rRNA947 bp
16S rRNA1,679 bp
All tRNA1,555 bp
D-loop999 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 45.74% | −0.359 | −0.043 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,050 bp | 44.95% | −0.360 | −0.031 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 44.75% | −0.182 | −0.099 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 45.59% | −0.244 | +0.011 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 43.45% | −0.479 | +0.074 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 45.91% | −0.408 | −0.103 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 46.62% | −0.257 | −0.098 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 47.56% | −0.398 | −0.104 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 48.49% | −0.333 | −0.059 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 43.45% | −0.313 | −0.014 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 42.52% | −0.384 | +0.020 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 48.08% | −0.442 | +0.483 | |||||
| CYTBCytochrome b | 1,141 bp | 47.06% | −0.307 | −0.093 | |||||
| 12S rRNA12S ribosomal RNA | 947 bp | 49.74% | −0.087 | +0.202 | |||||
| 16S rRNA16S ribosomal RNA | 1,679 bp | 47.71% | −0.056 | +0.262 | |||||
| D-loopControl region (D-loop) | 999 bp | 38.24% | −0.199 | +0.053 |
Codon usage
Counts per codon, darker is more frequent3,809 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU118
UUC111
Leu L17.1%
UUA116
UUG26
CUU164
CUC129
CUA180
CUG35
Ile I7.2%
AUU154
AUC121
Met M4.0%
AUA100
AUG54
Val V6.0%
GUU57
GUC55
GUA88
GUG29
Ser S6.2%
UCU54
UCC66
UCA56
UCG9
AGU13
AGC39
Pro P5.6%
CCU47
CCC91
CCA62
CCG14
Thr T8.1%
ACU78
ACC123
ACA97
ACG9
Ala A9.2%
GCU82
GCC152
GCA93
GCG25
Tyr Y2.9%
UAU51
UAC60
His H2.8%
CAU29
CAC77
Gln Q2.5%
CAA79
CAG17
Asn N2.9%
AAU44
AAC68
Lys K2.0%
AAA68
AAG10
Asp D2.0%
GAU21
GAC55
Glu E2.8%
GAA84
GAG23
Cys C0.7%
UGU12
UGC15
Trp W3.2%
UGA106
UGG15
Arg R2.0%
CGU12
CGC15
CGA40
CGG8
Gly G6.4%
GGU35
GGC69
GGA88
GGG53
Stop 0.2%
UAA7
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_022844.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| D-loop | Control region | 1 | 999 | 999 bp | – | 38.2% |
| tRNA-Phe | Transfer RNA | 1,000 | 1,067 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 1,068 | 2,014 | 947 bp | + | 49.7% |
| tRNA-Val | Transfer RNA | 2,015 | 2,086 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 2,087 | 3,765 | 1,679 bp | + | 47.7% |
| tRNA-Leu (UUR) | Transfer RNA | 3,766 | 3,840 | 75 bp | + | – |
| ND1 | Protein-coding gene | 3,841 | 4,815 | 975 bp | + | 45.7% |
| tRNA-Ile | Transfer RNA | 4,822 | 4,893 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 4,891 | 4,961 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 4,961 | 5,029 | 69 bp | + | – |
| ND2 | Protein-coding gene | 5,030 | 6,079 | 1,050 bp | + | 45.0% |
| tRNA-Trp | Transfer RNA | 6,080 | 6,149 | 70 bp | + | – |
| tRNA-Ala | Transfer RNA | 6,152 | 6,220 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 6,222 | 6,294 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 6,330 | 6,397 | 68 bp | − | – |
| tRNA-Tyr | Transfer RNA | 6,398 | 6,468 | 71 bp | − | – |
| COX1 | Protein-coding gene | 6,470 | 8,020 | 1,551 bp | + | 44.8% |
| tRNA-Ser (UCN) | Transfer RNA | 8,021 | 8,091 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 8,096 | 8,169 | 74 bp | + | – |
| COX2 | Protein-coding gene | 8,184 | 8,874 | 691 bp | + | 45.6% |
| tRNA-Lys | Transfer RNA | 8,875 | 8,948 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 8,950 | 9,117 | 168 bp | + | 43.5% |
| ATP6 | Protein-coding gene | 9,108 | 9,791 | 684 bp | + | 45.9% |
| COX3 | Protein-coding gene | 9,791 | 10,575 | 785 bp | + | 46.6% |
| tRNA-Gly | Transfer RNA | 10,576 | 10,645 | 70 bp | + | – |
| ND3 | Protein-coding gene | 10,646 | 10,994 | 349 bp | + | 47.6% |
| tRNA-Arg | Transfer RNA | 10,995 | 11,064 | 70 bp | + | – |
| ND4L | Protein-coding gene | 11,065 | 11,361 | 297 bp | + | 48.5% |
| ND4 | Protein-coding gene | 11,355 | 12,735 | 1,381 bp | + | 43.5% |
| tRNA-His | Transfer RNA | 12,736 | 12,804 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 12,805 | 12,874 | 70 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 12,875 | 12,947 | 73 bp | + | – |
| ND5 | Protein-coding gene | 12,948 | 14,786 | 1,839 bp | + | 42.5% |
| ND6 | Protein-coding gene | 14,783 | 15,304 | 522 bp | − | 48.1% |
| tRNA-Glu | Transfer RNA | 15,305 | 15,373 | 69 bp | − | – |
| CYTB | Protein-coding gene | 15,377 | 16,517 | 1,141 bp | + | 47.1% |
| tRNA-Thr | Transfer RNA | 16,518 | 16,589 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 16,589 | 16,658 | 70 bp | − | – |