Sarcocheilichthys lacustris
GC content
43.37%
Whole genome
Non-coding
1,073 bp
D-loop 1,010 bp
Where Sarcocheilichthys lacustris sits among 2,335 species
Whole-genome GC content against maximum lifespan. Sarcocheilichthys lacustris has the 1,941st longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,683 bp
- GC skew (G − C) / (G + C)
- −0.230
- AT skew (A − T) / (A + T)
- +0.074
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- questionable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,683 bp
Protein-coding11,405 bp
12S rRNA960 bp
16S rRNA1,684 bp
All tRNA1,561 bp
D-loop1,010 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 44.00% | −0.287 | +0.055 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 44.26% | −0.404 | +0.101 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 45.97% | −0.156 | −0.055 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 43.71% | −0.212 | +0.054 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 41.82% | −0.391 | +0.104 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 41.52% | −0.310 | −0.050 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 45.54% | −0.238 | −0.002 | |||||
| ND3NADH dehydrogenase subunit 3 | 350 bp | 43.43% | −0.276 | −0.101 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 47.81% | −0.310 | −0.045 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,382 bp | 42.91% | −0.305 | +0.049 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 41.07% | −0.353 | +0.057 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 44.44% | −0.405 | +0.434 | |||||
| CYTBCytochrome b | 1,141 bp | 43.03% | −0.279 | −0.025 | |||||
| 12S rRNA12S ribosomal RNA | 960 bp | 49.06% | −0.083 | +0.235 | |||||
| 16S rRNA16S ribosomal RNA | 1,684 bp | 43.88% | −0.055 | +0.255 | |||||
| D-loopControl region (D-loop) | 1,010 bp | 32.38% | −0.205 | +0.051 |
Codon usage
Counts per codon, darker is more frequent3,805 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU124
UUC106
Leu L16.3%
UUA96
UUG23
CUU117
CUC91
CUA230
CUG63
Ile I7.6%
AUU201
AUC87
Met M4.9%
AUA131
AUG55
Val V5.7%
GUU50
GUC39
GUA99
GUG29
Ser S6.3%
UCU44
UCC56
UCA74
UCG14
AGU11
AGC41
Pro P5.7%
CCU26
CCC83
CCA90
CCG17
Thr T8.1%
ACU47
ACC89
ACA155
ACG17
Ala A8.8%
GCU65
GCC139
GCA111
GCG20
Tyr Y2.9%
UAU51
UAC60
His H2.7%
CAU23
CAC79
Gln Q2.5%
CAA82
CAG13
Asn N3.3%
AAU60
AAC66
Lys K2.0%
AAA67
AAG10
Asp D2.1%
GAU22
GAC57
Glu E2.7%
GAA80
GAG22
Cys C0.7%
UGU9
UGC16
Trp W3.2%
UGA107
UGG14
Arg R2.0%
CGU8
CGC11
CGA48
CGG9
Gly G6.4%
GGU23
GGC64
GGA99
GGG58
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_022934.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (43.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,029 | 960 bp | + | 49.1% |
| tRNA-Val | Transfer RNA | 1,030 | 1,101 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,102 | 2,785 | 1,684 bp | + | 43.9% |
| tRNA-Leu (UUR) | Transfer RNA | 2,787 | 2,862 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,864 | 3,838 | 975 bp | + | 44.0% |
| tRNA-Ile | Transfer RNA | 3,843 | 3,914 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,913 | 3,983 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,985 | 4,053 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,054 | 5,099 | 1,046 bp | + | 44.3% |
| tRNA-Trp | Transfer RNA | 5,100 | 5,170 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,173 | 5,241 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,243 | 5,315 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,346 | 5,413 | 68 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,416 | 5,486 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,488 | 7,038 | 1,551 bp | + | 46.0% |
| tRNA-Ser (UCN) | Transfer RNA | 7,039 | 7,109 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,113 | 7,184 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,196 | 7,886 | 691 bp | + | 43.7% |
| tRNA-Lys | Transfer RNA | 7,887 | 7,962 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,964 | 8,128 | 165 bp | + | 41.8% |
| ATP6 | Protein-coding gene | 8,122 | 8,805 | 684 bp | + | 41.5% |
| COX3 | Protein-coding gene | 8,805 | 9,588 | 784 bp | + | 45.5% |
| tRNA-Gly | Transfer RNA | 9,589 | 9,660 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,661 | 10,010 | 350 bp | + | 43.4% |
| tRNA-Arg | Transfer RNA | 10,011 | 10,080 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,081 | 10,377 | 297 bp | + | 47.8% |
| ND4 | Protein-coding gene | 10,371 | 11,752 | 1,382 bp | + | 42.9% |
| tRNA-His | Transfer RNA | 11,753 | 11,821 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,822 | 11,890 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,892 | 11,964 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,965 | 13,800 | 1,836 bp | + | 41.1% |
| ND6 | Protein-coding gene | 13,797 | 14,318 | 522 bp | − | 44.4% |
| tRNA-Glu | Transfer RNA | 14,319 | 14,387 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,392 | 15,532 | 1,141 bp | + | 43.0% |
| tRNA-Thr | Transfer RNA | 15,533 | 15,604 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,604 | 15,673 | 70 bp | − | – |
| D-loop | Control region | 15,674 | 16,683 | 1,010 bp | – | 32.4% |