Sardinella gibbosa
Goldstripe sardinella
GC content
49.12%
Whole genome
Non-coding
1,063 bp
D-loop 992 bp
Where Goldstripe sardinella sits among 2,335 species
Whole-genome GC content against maximum lifespan. Goldstripe sardinella has the 1,862nd longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,658 bp
- GC skew (G − C) / (G + C)
- −0.200
- AT skew (A − T) / (A + T)
- +0.026
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,658 bp
Protein-coding11,403 bp
12S rRNA951 bp
16S rRNA1,687 bp
All tRNA1,554 bp
D-loop992 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 52.31% | −0.243 | −0.144 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 51.39% | −0.326 | −0.024 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 47.97% | −0.172 | −0.041 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 46.74% | −0.214 | +0.049 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 48.81% | −0.317 | +0.070 | |||||
| ATP6ATP synthase F0 subunit 6 | 681 bp | 49.49% | −0.323 | −0.081 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 50.96% | −0.230 | −0.055 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 50.72% | −0.232 | −0.140 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 53.20% | −0.228 | −0.050 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 50.83% | −0.217 | −0.040 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 49.35% | −0.267 | −0.026 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 52.87% | −0.261 | +0.398 | |||||
| CYTBCytochrome b | 1,141 bp | 48.90% | −0.244 | −0.094 | |||||
| 12S rRNA12S ribosomal RNA | 951 bp | 50.79% | −0.072 | +0.179 | |||||
| 16S rRNA16S ribosomal RNA | 1,687 bp | 49.67% | −0.088 | +0.277 | |||||
| D-loopControl region (D-loop) | 992 bp | 37.60% | −0.137 | +0.002 |
Codon usage
Counts per codon, darker is more frequent3,805 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.3%
UUU67
UUC171
Leu L16.3%
UUA46
UUG27
CUU144
CUC116
CUA173
CUG113
Ile I7.0%
AUU124
AUC141
Met M4.0%
AUA32
AUG122
Val V6.5%
GUU39
GUC80
GUA77
GUG51
Ser S6.1%
UCU31
UCC78
UCA49
UCG22
AGU8
AGC46
Pro P5.7%
CCU57
CCC68
CCA59
CCG32
Thr T8.2%
ACU68
ACC130
ACA87
ACG28
Ala A9.6%
GCU70
GCC155
GCA109
GCG32
Tyr Y3.0%
UAU23
UAC90
His H2.8%
CAU20
CAC85
Gln Q2.4%
CAA65
CAG27
Asn N2.9%
AAU38
AAC73
Lys K2.0%
AAA42
AAG34
Asp D2.0%
GAU20
GAC57
Glu E2.7%
GAA61
GAG40
Cys C0.8%
UGU9
UGC22
Trp W3.1%
UGA84
UGG33
Arg R2.0%
CGU9
CGC7
CGA43
CGG18
Gly G6.5%
GGU27
GGC54
GGA81
GGG84
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_037131.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (49.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,019 | 951 bp | + | 50.8% |
| tRNA-Val | Transfer RNA | 1,020 | 1,091 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,092 | 2,778 | 1,687 bp | + | 49.7% |
| tRNA-Leu (UUR) | Transfer RNA | 2,779 | 2,853 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,854 | 3,828 | 975 bp | + | 52.3% |
| tRNA-Ile | Transfer RNA | 3,837 | 3,908 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,908 | 3,978 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,978 | 4,046 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,047 | 5,091 | 1,045 bp | + | 51.4% |
| tRNA-Trp | Transfer RNA | 5,092 | 5,163 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,165 | 5,233 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,236 | 5,308 | 73 bp | + | – |
| tRNA-Cys | Transfer RNA | 5,343 | 5,412 | 70 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,415 | 5,485 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,487 | 7,037 | 1,551 bp | + | 48.0% |
| tRNA-Ser (UCN) | Transfer RNA | 7,038 | 7,108 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,113 | 7,181 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,194 | 7,884 | 691 bp | + | 46.7% |
| tRNA-Lys | Transfer RNA | 7,885 | 7,958 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,960 | 8,127 | 168 bp | + | 48.8% |
| ATP6 | Protein-coding gene | 8,121 | 8,801 | 681 bp | + | 49.5% |
| COX3 | Protein-coding gene | 8,801 | 9,585 | 785 bp | + | 51.0% |
| tRNA-Gly | Transfer RNA | 9,586 | 9,657 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,658 | 10,006 | 349 bp | + | 50.7% |
| tRNA-Arg | Transfer RNA | 10,007 | 10,076 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,077 | 10,373 | 297 bp | + | 53.2% |
| ND4 | Protein-coding gene | 10,367 | 11,747 | 1,381 bp | + | 50.8% |
| tRNA-His | Transfer RNA | 11,748 | 11,816 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,817 | 11,883 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,884 | 11,955 | 72 bp | + | – |
| ND5 | Protein-coding gene | 11,956 | 13,791 | 1,836 bp | + | 49.4% |
| ND6 | Protein-coding gene | 13,788 | 14,309 | 522 bp | − | 52.9% |
| tRNA-Glu | Transfer RNA | 14,310 | 14,378 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,385 | 15,525 | 1,141 bp | + | 48.9% |
| tRNA-Thr | Transfer RNA | 15,526 | 15,597 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,597 | 15,666 | 70 bp | − | – |
| D-loop | Control region | 15,667 | 16,658 | 992 bp | – | 37.6% |