Sardinella lemuru
Bali sardinella
GC content
49.76%
Whole genome
Non-coding
1,030 bp
D-loop 959 bp
Where Bali sardinella sits among 2,335 species
Whole-genome GC content against maximum lifespan. Bali sardinella has the 2,065th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,616 bp
- GC skew (G − C) / (G + C)
- −0.180
- AT skew (A − T) / (A + T)
- −0.003
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,616 bp
Protein-coding11,385 bp
12S rRNA956 bp
16S rRNA1,693 bp
All tRNA1,552 bp
D-loop959 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 53.03% | −0.250 | −0.131 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 54.45% | −0.304 | −0.059 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 49.52% | −0.135 | −0.114 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 47.32% | −0.168 | 0.000 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 44.64% | −0.253 | +0.054 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 46.78% | −0.281 | −0.115 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 51.59% | −0.205 | −0.111 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 47.56% | −0.205 | −0.169 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 53.87% | −0.163 | −0.197 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 49.67% | −0.195 | −0.059 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,833 bp | 48.99% | −0.256 | −0.044 | |||||
| ND6NADH dehydrogenase subunit 6 | 507 bp | 52.47% | −0.226 | +0.344 | |||||
| CYTBCytochrome b | 1,141 bp | 48.12% | −0.213 | −0.135 | |||||
| 12S rRNA12S ribosomal RNA | 956 bp | 50.63% | −0.025 | +0.140 | |||||
| 16S rRNA16S ribosomal RNA | 1,693 bp | 49.50% | −0.110 | +0.258 | |||||
| D-loopControl region (D-loop) | 959 bp | 49.53% | −0.116 | +0.037 |
Codon usage
Counts per codon, darker is more frequent3,800 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.2%
UUU85
UUC151
Leu L16.0%
UUA70
UUG38
CUU149
CUC111
CUA137
CUG102
Ile I6.5%
AUU129
AUC119
Met M4.0%
AUA50
AUG102
Val V7.0%
GUU73
GUC74
GUA66
GUG54
Ser S6.1%
UCU31
UCC67
UCA51
UCG32
AGU10
AGC41
Pro P5.7%
CCU56
CCC74
CCA59
CCG26
Thr T8.2%
ACU54
ACC143
ACA77
ACG37
Ala A9.9%
GCU73
GCC157
GCA103
GCG45
Tyr Y2.9%
UAU32
UAC79
His H2.8%
CAU17
CAC88
Gln Q2.5%
CAA53
CAG42
Asn N2.8%
AAU32
AAC74
Lys K2.0%
AAA40
AAG35
Asp D2.1%
GAU19
GAC59
Glu E2.6%
GAA47
GAG51
Cys C0.9%
UGU12
UGC22
Trp W3.1%
UGA90
UGG27
Arg R2.1%
CGU13
CGC11
CGA38
CGG19
Gly G6.5%
GGU35
GGC70
GGA66
GGG76
Stop 0.2%
UAA5
UAG2
AGA0
AGG0
Genome map
38 annotated features in NC_039553.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (49.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,024 | 956 bp | + | 50.6% |
| tRNA-Val | Transfer RNA | 1,025 | 1,096 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,097 | 2,789 | 1,693 bp | + | 49.5% |
| tRNA-Leu (UUR) | Transfer RNA | 2,790 | 2,864 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,865 | 3,839 | 975 bp | + | 53.0% |
| tRNA-Ile | Transfer RNA | 3,848 | 3,919 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,919 | 3,989 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,989 | 4,057 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,058 | 5,102 | 1,045 bp | + | 54.5% |
| tRNA-Trp | Transfer RNA | 5,103 | 5,173 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,177 | 5,245 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,247 | 5,319 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,352 | 5,418 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,423 | 5,493 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,495 | 7,045 | 1,551 bp | + | 49.5% |
| tRNA-Ser (UCN) | Transfer RNA | 7,046 | 7,116 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,121 | 7,189 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,201 | 7,891 | 691 bp | + | 47.3% |
| tRNA-Lys | Transfer RNA | 7,892 | 7,965 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,967 | 8,134 | 168 bp | + | 44.6% |
| ATP6 | Protein-coding gene | 8,125 | 8,808 | 684 bp | + | 46.8% |
| COX3 | Protein-coding gene | 8,808 | 9,592 | 785 bp | + | 51.6% |
| tRNA-Gly | Transfer RNA | 9,593 | 9,664 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,665 | 10,013 | 349 bp | + | 47.6% |
| tRNA-Arg | Transfer RNA | 10,014 | 10,083 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,084 | 10,380 | 297 bp | + | 53.9% |
| ND4 | Protein-coding gene | 10,374 | 11,754 | 1,381 bp | + | 49.7% |
| tRNA-His | Transfer RNA | 11,755 | 11,823 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,824 | 11,890 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,891 | 11,964 | 74 bp | + | – |
| ND5 | Protein-coding gene | 11,965 | 13,797 | 1,833 bp | + | 49.0% |
| ND6 | Protein-coding gene | 13,794 | 14,300 | 507 bp | − | 52.5% |
| tRNA-Glu | Transfer RNA | 14,301 | 14,369 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,376 | 15,516 | 1,141 bp | + | 48.1% |
| tRNA-Thr | Transfer RNA | 15,517 | 15,588 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,588 | 15,657 | 70 bp | − | – |
| D-loop | Control region | 15,658 | 16,616 | 959 bp | – | 49.5% |