Sardinella longiceps

Indian oil sardine

Maximum lifespan

4 yr

AnAge record

mtDNA size

16,613 bp

RefSeq NC_033407.1

GC content

47.60%

Whole genome

Non-coding

1,024 bp

D-loop 958 bp

Where Indian oil sardine sits among 2,335 species

Whole-genome GC content against maximum lifespan. Indian oil sardine has the 2,113th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,613 bp

GC skew (G − C) / (G + C): −0.206
AT skew (A − T) / (A + T): +0.026

Life history

Maximum lifespan: 4 years
Adult weight: 110 g
Female sexual maturity: 2 years
Male sexual maturity: 719 days

Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 03848)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: New in build 2
In the database since: build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,613 bp

Protein-coding11,400 bp

12S rRNA955 bp

16S rRNA1,689 bp

All tRNA1,545 bp

D-loop958 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Sardinella longiceps genes

ND1NADH dehydrogenase subunit 1	975 bp	21.3%	28.8%	18.8%	31.1%	49.85%	−0.247	−0.149
ND2NADH dehydrogenase subunit 2	1,045 bp	25.1%	24.9%	16.8%	33.2%	50.05%	−0.327	+0.004
COX1Cytochrome c oxidase subunit I	1,548 bp	25.3%	28.8%	19.3%	26.7%	45.93%	−0.162	−0.066
COX2Cytochrome c oxidase subunit II	691 bp	27.8%	26.3%	17.8%	28.1%	45.88%	−0.224	+0.027
ATP8ATP synthase F0 subunit 8	168 bp	31.0%	26.8%	12.5%	29.8%	42.26%	−0.408	+0.072
ATP6ATP synthase F0 subunit 6	684 bp	26.0%	28.8%	14.9%	30.3%	45.18%	−0.340	−0.051
COX3Cytochrome c oxidase subunit III	785 bp	24.1%	26.5%	18.6%	30.8%	49.43%	−0.247	−0.048
ND3NADH dehydrogenase subunit 3	349 bp	23.2%	29.8%	17.5%	29.5%	46.99%	−0.256	−0.124
ND4LNADH dehydrogenase subunit 4L	297 bp	23.2%	24.9%	18.2%	33.7%	51.85%	−0.299	−0.035
ND4NADH dehydrogenase subunit 4	1,381 bp	23.6%	26.1%	19.3%	31.0%	50.33%	−0.232	−0.050
ND5NADH dehydrogenase subunit 5	1,836 bp	25.6%	26.3%	17.2%	30.9%	48.09%	−0.287	−0.014
ND6NADH dehydrogenase subunit 6	522 bp	37.0%	12.6%	17.8%	32.6%	50.38%	−0.293	+0.490
CYTBCytochrome b	1,141 bp	23.8%	28.9%	17.8%	29.5%	47.33%	−0.248	−0.098
12S rRNA12S ribosomal RNA	955 bp	28.5%	20.6%	23.5%	27.4%	50.89%	−0.078	+0.160
16S rRNA16S ribosomal RNA	1,689 bp	32.9%	20.0%	21.9%	25.2%	47.13%	−0.070	+0.245
D-loopControl region (D-loop)	958 bp	31.2%	30.6%	16.4%	21.8%	38.21%	−0.142	+0.010

Codon usage

Counts per codon, darker is more frequent

Gene

3,805 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.2%

UUU73

UUC163

Leu L16.3%

UUA80

UUG29

CUU158

CUC127

CUA151

CUG77

Ile I6.8%

AUU136

AUC124

Met M4.1%

AUA34

AUG121

Val V6.7%

GUU67

GUC89

GUA66

GUG33

Ser S6.2%

UCU38

UCC60

UCA59

UCG24

AGU11

AGC43

Pro P5.7%

CCU52

CCC71

CCA76

CCG19

Thr T8.0%

ACU62

ACC133

ACA89

ACG19

Ala A9.6%

GCU64

GCC161

GCA113

GCG28

Tyr Y3.0%

UAU40

UAC73

His H2.7%

CAU19

CAC83

Gln Q2.4%

CAA63

CAG28

Asn N2.9%

AAU43

AAC69

Lys K2.0%

AAA44

AAG33

Asp D2.0%

GAU20

GAC55

Glu E2.7%

GAA69

GAG33

Cys C0.9%

UGU17

UGC17

Trp W3.1%

UGA99

UGG19

Arg R2.0%

CGU6

CGC5

CGA50

CGG15

Gly G6.5%

GGU25

GGC44

GGA114

GGG65

Stop 0.2%

UAA7

UAG0

AGA0

AGG0

Genome map

38 annotated features in NC_033407.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (47.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Sardinella longiceps (NC_033407.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	62	62 bp	+	–
12S rRNA	Ribosomal RNA	63	1,017	955 bp	+	50.9%
tRNA-Val	Transfer RNA	1,018	1,089	72 bp	+	–
16S rRNA	Ribosomal RNA	1,090	2,778	1,689 bp	+	47.1%
tRNA-Leu (UUR)	Transfer RNA	2,779	2,854	76 bp	+	–
ND1	Protein-coding gene	2,855	3,829	975 bp	+	49.9%
tRNA-Ile	Transfer RNA	3,837	3,908	72 bp	+	–
tRNA-Gln	Transfer RNA	3,908	3,978	71 bp	−	–
tRNA-Met	Transfer RNA	3,978	4,046	69 bp	+	–
ND2	Protein-coding gene	4,047	5,091	1,045 bp	+	50.1%
tRNA-Trp	Transfer RNA	5,092	5,163	72 bp	+	–
tRNA-Ala	Transfer RNA	5,165	5,233	69 bp	−	–
tRNA-Asn	Transfer RNA	5,234	5,307	74 bp	−	–
tRNA-Cys	Transfer RNA	5,340	5,405	66 bp	−	–
tRNA-Tyr	Transfer RNA	5,407	5,477	71 bp	−	–
COX1	Protein-coding gene	5,479	7,026	1,548 bp	+	45.9%
tRNA-Ser (UCN)	Transfer RNA	7,027	7,097	71 bp	−	–
tRNA-Asp	Transfer RNA	7,102	7,170	69 bp	+	–
COX2	Protein-coding gene	7,184	7,874	691 bp	+	45.9%
tRNA-Lys	Transfer RNA	7,875	7,948	74 bp	+	–
ATP8	Protein-coding gene	7,950	8,117	168 bp	+	42.3%
ATP6	Protein-coding gene	8,108	8,791	684 bp	+	45.2%
COX3	Protein-coding gene	8,791	9,575	785 bp	+	49.4%
tRNA-Gly	Transfer RNA	9,576	9,647	72 bp	+	–
ND3	Protein-coding gene	9,648	9,996	349 bp	+	47.0%
tRNA-Arg	Transfer RNA	9,997	10,065	69 bp	+	–
ND4L	Protein-coding gene	10,066	10,362	297 bp	+	51.9%
ND4	Protein-coding gene	10,356	11,736	1,381 bp	+	50.3%
tRNA-His	Transfer RNA	11,737	11,805	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,806	11,872	67 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,873	11,944	72 bp	+	–
ND5	Protein-coding gene	11,945	13,780	1,836 bp	+	48.1%
ND6	Protein-coding gene	13,777	14,298	522 bp	−	50.4%
tRNA-Glu	Transfer RNA	14,299	14,367	69 bp	−	–
CYTB	Protein-coding gene	14,374	15,514	1,141 bp	+	47.3%
tRNA-Thr	Transfer RNA	15,515	15,586	72 bp	+	–
tRNA-Pro	Transfer RNA	15,586	15,655	70 bp	−	–
D-loop	Control region	15,656	16,613	958 bp	–	38.2%