Sargocentron spiniferum
Sabre squirrelfish
GC content
44.28%
Whole genome
Non-coding
938 bp
D-loop 865 bp
Where Sabre squirrelfish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Sabre squirrelfish has the 1,827th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,548 bp
- GC skew (G − C) / (G + C)
- −0.309
- AT skew (A − T) / (A + T)
- +0.086
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,548 bp
Protein-coding11,407 bp
12S rRNA952 bp
16S rRNA1,701 bp
All tRNA1,550 bp
D-loop865 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 45.54% | −0.383 | +0.013 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,047 bp | 45.46% | −0.508 | +0.163 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 43.46% | −0.211 | −0.070 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 43.42% | −0.300 | +0.043 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 45.83% | −0.506 | +0.055 | |||||
| ATP6ATP synthase F0 subunit 6 | 687 bp | 44.11% | −0.446 | −0.047 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 46.75% | −0.313 | +0.005 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 43.84% | −0.359 | −0.133 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 47.14% | −0.414 | −0.147 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 44.46% | −0.410 | +0.072 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 44.43% | −0.432 | +0.076 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 43.30% | −0.496 | +0.453 | |||||
| CYTBCytochrome b | 1,141 bp | 45.05% | −0.389 | −0.018 | |||||
| 12S rRNA12S ribosomal RNA | 952 bp | 48.32% | −0.122 | +0.252 | |||||
| 16S rRNA16S ribosomal RNA | 1,701 bp | 43.97% | −0.123 | +0.265 | |||||
| D-loopControl region (D-loop) | 865 bp | 36.42% | −0.194 | +0.098 |
Codon usage
Counts per codon, darker is more frequent3,809 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU97
UUC133
Leu L17.4%
UUA88
UUG12
CUU138
CUC125
CUA269
CUG31
Ile I7.2%
AUU142
AUC131
Met M4.1%
AUA105
AUG53
Val V5.7%
GUU65
GUC60
GUA75
GUG17
Ser S6.1%
UCU43
UCC67
UCA65
UCG4
AGU13
AGC40
Pro P5.8%
CCU48
CCC88
CCA78
CCG6
Thr T8.1%
ACU59
ACC108
ACA136
ACG7
Ala A8.9%
GCU68
GCC164
GCA100
GCG8
Tyr Y3.0%
UAU42
UAC73
His H2.8%
CAU26
CAC79
Gln Q2.7%
CAA97
CAG6
Asn N3.2%
AAU36
AAC86
Lys K2.0%
AAA73
AAG4
Asp D2.0%
GAU16
GAC59
Glu E2.7%
GAA92
GAG11
Cys C0.6%
UGU8
UGC15
Trp W3.2%
UGA114
UGG6
Arg R1.9%
CGU8
CGC17
CGA42
CGG7
Gly G6.3%
GGU43
GGC63
GGA113
GGG22
Stop 0.2%
UAA7
UAG0
AGA0
AGG1
Genome map
38 annotated features in NC_030597.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (44.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 70 | 70 bp | + | – |
| 12S rRNA | Ribosomal RNA | 71 | 1,022 | 952 bp | + | 48.3% |
| tRNA-Val | Transfer RNA | 1,023 | 1,094 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,095 | 2,795 | 1,701 bp | + | 44.0% |
| tRNA-Leu (UUR) | Transfer RNA | 2,796 | 2,869 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,870 | 3,844 | 975 bp | + | 45.5% |
| tRNA-Ile | Transfer RNA | 3,853 | 3,922 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,922 | 3,991 | 70 bp | − | – |
| tRNA-Met | Transfer RNA | 3,992 | 4,061 | 70 bp | + | – |
| ND2 | Protein-coding gene | 4,062 | 5,108 | 1,047 bp | + | 45.5% |
| tRNA-Trp | Transfer RNA | 5,109 | 5,180 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,182 | 5,250 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,252 | 5,324 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,359 | 5,425 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,426 | 5,493 | 68 bp | − | – |
| COX1 | Protein-coding gene | 5,495 | 7,045 | 1,551 bp | + | 43.5% |
| tRNA-Ser (UCN) | Transfer RNA | 7,046 | 7,116 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,120 | 7,188 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,206 | 7,896 | 691 bp | + | 43.4% |
| tRNA-Lys | Transfer RNA | 7,898 | 7,971 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,973 | 8,140 | 168 bp | + | 45.8% |
| ATP6 | Protein-coding gene | 8,128 | 8,814 | 687 bp | + | 44.1% |
| COX3 | Protein-coding gene | 8,814 | 9,598 | 785 bp | + | 46.8% |
| tRNA-Gly | Transfer RNA | 9,599 | 9,669 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,670 | 10,018 | 349 bp | + | 43.8% |
| tRNA-Arg | Transfer RNA | 10,019 | 10,087 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,088 | 10,384 | 297 bp | + | 47.1% |
| ND4 | Protein-coding gene | 10,378 | 11,758 | 1,381 bp | + | 44.5% |
| tRNA-His | Transfer RNA | 11,759 | 11,827 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,828 | 11,896 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,898 | 11,970 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,971 | 13,809 | 1,839 bp | + | 44.4% |
| ND6 | Protein-coding gene | 13,805 | 14,326 | 522 bp | − | 43.3% |
| tRNA-Glu | Transfer RNA | 14,327 | 14,395 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,400 | 15,540 | 1,141 bp | + | 45.1% |
| tRNA-Thr | Transfer RNA | 15,541 | 15,612 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,614 | 15,683 | 70 bp | − | – |
| D-loop | Control region | 15,684 | 16,548 | 865 bp | – | 36.4% |